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NM_015443.4(KANSL1):c.1899C>T (p.Cys633=)

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Interpretation:
Likely benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
2
First in ClinVar:
May 23, 2021
Most recent Submission:
May 16, 2022
Last evaluated:
Aug 25, 2020
Accession:
VCV001116453.5
Variation ID:
1116453
Description:
single nucleotide variant
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NM_015443.4(KANSL1):c.1899C>T (p.Cys633=)

Allele ID
1104958
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
17q21.31
Genomic location
17: 46050654 (GRCh38) GRCh38 UCSC
17: 44128020 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NM_015443.4:c.1899C>T MANE Select NP_056258.1:p.Cys633= synonymous
NM_001193465.2:c.1899C>T NP_001180394.1:p.Cys633= synonymous
NM_001193466.2:c.1899C>T NP_001180395.1:p.Cys633= synonymous
... more HGVS
Protein change
-
Other names
-
Canonical SPDI
NC_000017.11:46050653:G:A
Functional consequence
-
Global minor allele frequency (GMAF)
-

Allele frequency
-
Links
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Likely benign 1 criteria provided, single submitter Aug 25, 2020 RCV001444825.4
Likely benign 1 criteria provided, single submitter Feb 6, 2020 RCV001712902.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
KANSL1 Sufficient evidence for dosage pathogenicity No evidence available GRCh38
GRCh38
GRCh38
GRCh37 		1071 1218

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
 Review status
(Assertion criteria)
 Condition
(Inheritance)
 Submitter More information
Likely benign
(Feb 06, 2020)
 criteria provided, single submitter
(GeneDX Variant Classification (06012015))
Method: clinical testing
 Not Provided
Affected status: yes
Allele origin: germline
GeneDx
Accession: SCV001939540.1
First in ClinVar: Sep 29, 2021
Last updated: Sep 29, 2021
Likely benign
(Aug 25, 2020)
 criteria provided, single submitter
(Invitae Variant Classification Sherloc (09022015))
Method: clinical testing
 Koolen-de Vries syndrome
Affected status: unknown
Allele origin: germline
Invitae
Accession: SCV001647838.2
First in ClinVar: May 23, 2021
Last updated: May 16, 2022

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Record last updated Aug 24, 2022 

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