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NM_032638.5(GATA2):c.1217A>G (p.Lys406Arg)

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Interpretation:
Uncertain significance​

Review status:
criteria provided, single submitter
Submissions:
1 (Most recent: Jan 7, 2021)
Last evaluated:
Oct 12, 2020
Accession:
VCV001056678.1
Variation ID:
1056678
Description:
single nucleotide variant
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NM_032638.5(GATA2):c.1217A>G (p.Lys406Arg)

Allele ID
1041939
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
3q21.3
Genomic location
3: 128481245 (GRCh38) GRCh38 UCSC
3: 128200088 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000003.11:g.128200088T>C
NC_000003.12:g.128481245T>C
NG_029334.1:g.16943A>G
... more HGVS
Protein change
K392R, K406R
Other names
-
Canonical SPDI
NC_000003.12:128481244:T:C
Functional consequence
-
Global minor allele frequency (GMAF)
-

Allele frequency
-
Links
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Uncertain significance 1 criteria provided, single submitter Oct 12, 2020 RCV001365545.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
GATA2 Sufficient evidence for dosage pathogenicity No evidence available GRCh38
GRCh37
823 849

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter More information
Uncertain significance
(Oct 12, 2020)
criteria provided, single submitter
Method: clinical testing
Dendritic cell, monocyte, B lymphocyte, and natural killer lymphocyte deficiency
Lymphedema, primary, with myelodysplasia
Affected status: unknown
Allele origin: germline
Invitae
Accession: SCV001561820.1
Submitted: (Jan 07, 2021)
Comment:
This sequence change replaces lysine with arginine at codon 406 of the GATA2 protein (p.Lys406Arg). The lysine residue is moderately conserved and there is a … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Record last updated Dec 09, 2021