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NM_032638.5(GATA2):c.657G>T (p.Glu219Asp)

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Interpretation:
Uncertain significance​

Review status:
criteria provided, single submitter
Submissions:
1 (Most recent: Jan 7, 2021)
Last evaluated:
Sep 8, 2020
Accession:
VCV001052524.1
Variation ID:
1052524
Description:
single nucleotide variant
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NM_032638.5(GATA2):c.657G>T (p.Glu219Asp)

Allele ID
1041949
Variant type
single nucleotide variant
Variant length
1 bp
Cytogenetic location
3q21.3
Genomic location
3: 128485941 (GRCh38) GRCh38 UCSC
3: 128204784 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000003.11:g.128204784C>A
NC_000003.12:g.128485941C>A
NG_029334.1:g.12247G>T
... more HGVS
Protein change
E219D
Other names
-
Canonical SPDI
NC_000003.12:128485940:C:A
Functional consequence
-
Global minor allele frequency (GMAF)
-

Allele frequency
-
Links
VarSome
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Uncertain significance 1 criteria provided, single submitter Sep 8, 2020 RCV001360724.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
GATA2 Sufficient evidence for dosage pathogenicity No evidence available GRCh38
GRCh37
823 849

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter More information
Uncertain significance
(Sep 08, 2020)
criteria provided, single submitter
Method: clinical testing
Dendritic cell, monocyte, B lymphocyte, and natural killer lymphocyte deficiency
Lymphedema, primary, with myelodysplasia
Affected status: unknown
Allele origin: germline
Invitae
Accession: SCV001556656.1
Submitted: (Jan 07, 2021)
Comment:
This sequence change replaces glutamic acid with aspartic acid at codon 219 of the GATA2 protein (p.Glu219Asp). The glutamic acid residue is weakly conserved and … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Record last updated Dec 09, 2021