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NM_005343.4(HRAS):c.156G>A (p.Leu52=) AND Cardiovascular phenotype

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 25, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004992255.1

Allele description [Variation Report for NM_005343.4(HRAS):c.156G>A (p.Leu52=)]

NM_005343.4(HRAS):c.156G>A (p.Leu52=)

Genes:
HRAS:HRas proto-oncogene, GTPase [Gene - OMIM - HGNC]
LRRC56:leucine rich repeat containing 56 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.5
Genomic location:
Preferred name:
NM_005343.4(HRAS):c.156G>A (p.Leu52=)
HGVS:
  • NC_000011.10:g.533900C>T
  • NG_007666.1:g.6651G>A
  • NM_001130442.3:c.156G>A
  • NM_001318054.2:c.-164G>A
  • NM_005343.4:c.156G>AMANE SELECT
  • NM_176795.5:c.156G>A
  • NP_001123914.1:p.Leu52=
  • NP_005334.1:p.Leu52=
  • NP_789765.1:p.Leu52=
  • LRG_506t1:c.156G>A
  • LRG_506:g.6651G>A
  • LRG_506p1:p.Leu52=
  • NC_000011.9:g.533900C>T
  • NM_005343.2:c.156G>A
Links:
dbSNP: rs1060504681
NCBI 1000 Genomes Browser:
rs1060504681
Molecular consequence:
  • NM_001318054.2:c.-164G>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001130442.3:c.156G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_005343.4:c.156G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_176795.5:c.156G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005600171Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Aug 25, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005600171.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 25, 2025