NM_000052.7(ATP7A):c.3116A>G (p.Lys1039Arg) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 18, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004779289.1

Allele description [Variation Report for NM_000052.7(ATP7A):c.3116A>G (p.Lys1039Arg)]

NM_000052.7(ATP7A):c.3116A>G (p.Lys1039Arg)

Gene:

ATP7A:ATPase copper transporting alpha [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq21.1

Genomic location:

Preferred name:

NM_000052.7(ATP7A):c.3116A>G (p.Lys1039Arg)

HGVS:

NC_000023.11:g.78031404A>G
NG_013224.2:g.125708A>G
NM_000052.7:c.3116A>GMANE SELECT
NM_001282224.2:c.2882A>G
NP_000043.4:p.Lys1039Arg
NP_001269153.1:p.Lys961Arg
NC_000023.10:g.77286902A>G
NM_000052.4:c.3116A>G
NR_104109.2:n.289A>G

Protein change:

K1039R

Molecular consequence:

NM_000052.7:c.3116A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001282224.2:c.2882A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_104109.2:n.289A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005389269	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Mar 18, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005389269

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Mar 18, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV005389269.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Has not been previously published as pathogenic or benign to our knowledge; In silico analysis supports that this missense variant does not alter protein structure/function

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Mar 11, 2025

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