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NM_001360016.2(G6PD):c.1090G>A (p.Glu364Lys) AND Anemia, nonspherocytic hemolytic, due to G6PD deficiency

Germline classification:
Uncertain significance (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004585203.1

Allele description [Variation Report for NM_001360016.2(G6PD):c.1090G>A (p.Glu364Lys)]

NM_001360016.2(G6PD):c.1090G>A (p.Glu364Lys)

Gene:
G6PD:glucose-6-phosphate dehydrogenase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001360016.2(G6PD):c.1090G>A (p.Glu364Lys)
HGVS:
  • NC_000023.11:g.154532764C>T
  • NG_009015.2:g.19809G>A
  • NM_000402.4:c.1180G>A
  • NM_001042351.3:c.1090G>A
  • NM_001360016.2:c.1090G>AMANE SELECT
  • NP_000393.4:p.Glu394Lys
  • NP_001035810.1:p.Glu364Lys
  • NP_001035810.1:p.Glu364Lys
  • NP_001346945.1:p.Glu364Lys
  • NC_000023.10:g.153760979C>T
  • NM_001042351.2:c.1090G>A
Protein change:
E364K
Links:
dbSNP: rs2523263028
NCBI 1000 Genomes Browser:
rs2523263028
Molecular consequence:
  • NM_000402.4:c.1180G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042351.3:c.1090G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001360016.2:c.1090G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Anemia, nonspherocytic hemolytic, due to G6PD deficiency (CNSHA1)
Synonyms:
Hemolytic anemia due to G6PD deficiency; Favism, susceptibility to; Class I glucose-6-phosphate dehydrogenase deficiency; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010480; MedGen: C2720289; Orphanet: 466026; OMIM: 300908

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005073961Neuberg Centre For Genomic Medicine, NCGM
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significancegermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Neuberg Centre For Genomic Medicine, NCGM, SCV005073961.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The missense variant c.1090G>A(p.Glu364Lys) in G6PD gene has not been reported previously as a pathogenic variant nor as a benign variant, to our knowledge. The observed variant is absent in gnomAD exomes database. This variant has not been submitted to the ClinVar database. The amino acid change p.Glu364Lys in G6PD is predicted as conserved by GERP++ and PhyloP across 100 vertebrates. The amino acid Glu at position 364 is changed to a Lys changing protein sequence and it might alter its composition and physico-chemical properties. For these reasons, this variant has been classified as Uncertain Significance (VUS).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 16, 2025