NM_006642.5(SDCCAG8):c.1473+48dup AND Senior-Loken syndrome 7

Germline classification:: Benign (1 submission)
Last evaluated:: Jul 15, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004577327.1

Allele description [Variation Report for NM_006642.5(SDCCAG8):c.1473+48dup]

NM_006642.5(SDCCAG8):c.1473+48dup

Gene:

SDCCAG8:SHH signaling and ciliogenesis regulator SDCCAG8 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

1q43

Genomic location:

Preferred name:

NM_006642.5(SDCCAG8):c.1473+48dup

HGVS:

NC_000001.11:g.243344379dup
NG_027811.1:g.93375dup
NM_001350246.2:c.570+48dup
NM_001350247.2:c.570+48dup
NM_001350248.2:c.1569+48dup
NM_001350249.2:c.1179+48dup
NM_001350251.2:c.570+48dup
NM_006642.5:c.1473+48dupMANE SELECT
NC_000001.10:g.243507681dup
NM_006642.3:c.1473+48dupA

Links:

dbSNP: rs398050192

Molecular consequence:

NM_001350246.2:c.570+48dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001350247.2:c.570+48dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001350248.2:c.1569+48dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001350249.2:c.1179+48dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001350251.2:c.570+48dup - intron variant - [Sequence Ontology: SO:0001627]
NM_006642.5:c.1473+48dup - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Senior-Loken syndrome 7 (SLSN7)
Identifiers:: MONDO: MONDO:0013326; MedGen: C3150877; Orphanet: 3156; OMIM: 613615

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002054681	Genome-Nilou Lab	criteria provided, single submitter (ACMG Guidelines, 2015)	Benign (Jul 15, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002054681

Genome-Nilou Lab

criteria provided, single submitter

(ACMG Guidelines, 2015)

Benign
(Jul 15, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	no	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome-Nilou Lab, SCV002054681.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	no	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 12, 2026

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