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NM_000051.4(ATM):c.5753G>C (p.Arg1918Thr) AND ATM-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 4, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004551266.2

Allele description [Variation Report for NM_000051.4(ATM):c.5753G>C (p.Arg1918Thr)]

NM_000051.4(ATM):c.5753G>C (p.Arg1918Thr)

Gene:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.5753G>C (p.Arg1918Thr)
HGVS:
  • NC_000011.10:g.108307975G>C
  • NG_009830.1:g.90144G>C
  • NG_054724.1:g.166858C>G
  • NM_000051.4:c.5753G>CMANE SELECT
  • NM_001351834.2:c.5753G>C
  • NP_000042.3:p.Arg1918Thr
  • NP_000042.3:p.Arg1918Thr
  • NP_001338763.1:p.Arg1918Thr
  • LRG_135t1:c.5753G>C
  • LRG_135:g.90144G>C
  • LRG_135p1:p.Arg1918Thr
  • NC_000011.9:g.108178702G>C
  • NM_000051.3:c.5753G>C
  • p.R1918T
Protein change:
R1918T
Links:
dbSNP: rs148064985
NCBI 1000 Genomes Browser:
rs148064985
Molecular consequence:
  • NM_000051.4:c.5753G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.5753G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
ATM-related disorder
Synonyms:
ATM-related disorders; ATM-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004115585PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Uncertain significance
(Sep 4, 2024)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004115585.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The ATM c.5753G>C variant is predicted to result in the amino acid substitution p.Arg1918Thr. This variant has been reported in individuals with breast cancer, pancreatic cancer, colonic adenomas, colorectal cancer, melanoma, non-Hodgkin lymphoma, and chronic lymphocytic leukemia (Table 2, Sipahimalani et al. 2007. PubMed ID: 17640065; Table S2, Bernstein et al. 2010. PubMed ID: 20305132; Table 4, Weren et al. 2015. PubMed ID: 25938944; Table S5, Decker et al. 2017. PubMed ID: 28779002; Table S6, Tiao et al. 2017. PubMed ID: 28652578; Table S3, Girard et al. 2019. PubMed ID: 30303537; Table S1, Casula et al. 2019. PubMed ID: 31382929; Table S6, Akcay et al. 2020. PubMed ID: 32658311; Table S3, Cremin et al. 2020. PubMed ID: 32255556). It has also been reported in control individuals from a chronic lymphocytic leukemia cohort study (Table S6, Tiao et al. 2017. PubMed ID: 28652578). This variant is reported in 0.0097% of alleles in individuals of European (Non-Finnish) descent in gnomAD. It is interpreted as uncertain significance by the vast majority of submitters in ClinVar (https://preview.ncbi.nlm.nih.gov/clinvar/variation/142535/). At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 30, 2024