NM_014159.7(SETD2):c.2155A>G (p.Asn719Asp) AND SETD2-related disorder

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 17, 2021
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004542917.2

Allele description [Variation Report for NM_014159.7(SETD2):c.2155A>G (p.Asn719Asp)]

NM_014159.7(SETD2):c.2155A>G (p.Asn719Asp)

Gene:

SETD2:SET domain containing 2, histone lysine methyltransferase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_014159.7(SETD2):c.2155A>G (p.Asn719Asp)

HGVS:

NC_000003.12:g.47122481T>C
NG_032091.1:g.46497A>G
NM_001349370.3:c.2023A>G
NM_014159.7:c.2155A>GMANE SELECT
NP_001336299.1:p.Asn675Asp
NP_054878.5:p.Asn719Asp
NP_054878.5:p.Asn719Asp
LRG_775t1:c.2155A>G
LRG_775:g.46497A>G
LRG_775p1:p.Asn719Asp
NC_000003.11:g.47163971T>C
NM_014159.6:c.2155A>G
NR_146158.3:n.2344A>G

Protein change:

N675D

Links:

dbSNP: rs115859828

NCBI 1000 Genomes Browser:

rs115859828

Molecular consequence:

NM_001349370.3:c.2023A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_014159.7:c.2155A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_146158.3:n.2344A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: SETD2-related disorder
Identifiers:

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004795100	PreventionGenetics, part of Exact Sciences	no assertion criteria provided	Likely benign (Sep 17, 2021)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004795100

PreventionGenetics, part of Exact Sciences

no assertion criteria provided

Likely benign
(Sep 17, 2021)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004795100.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 22, 2024

ClinVar

Relating variation to medicine