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NM_001378615.1(CC2D2A):c.4315-6_4315-3del AND CC2D2A-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 22, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004531174.1

Allele description [Variation Report for NM_001378615.1(CC2D2A):c.4315-6_4315-3del]

NM_001378615.1(CC2D2A):c.4315-6_4315-3del

Gene:
CC2D2A:coiled-coil and C2 domain containing 2A [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
4p15.32
Genomic location:
Preferred name:
NM_001378615.1(CC2D2A):c.4315-6_4315-3del
HGVS:
  • NC_000004.12:g.15596075TCTT[1]
  • NG_013035.1:g.131210TCTT[1]
  • NM_001080522.2:c.4315-6_4315-3del
  • NM_001378615.1:c.4315-6_4315-3delMANE SELECT
  • NM_001378617.1:c.4168-6_4168-3del
  • LRG_697t1:c.4315-6_4315-3del
  • LRG_697:g.131210TCTT[1]
  • NC_000004.11:g.15597698TCTT[1]
  • NC_000004.11:g.15597698_15597701del
  • NM_001080522.2:c.4315-6_4315-3delTCTT
Links:
dbSNP: rs926806639
NCBI 1000 Genomes Browser:
rs926806639
Molecular consequence:
  • NM_001080522.2:c.4315-6_4315-3del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001378615.1:c.4315-6_4315-3del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001378617.1:c.4168-6_4168-3del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
CC2D2A-related disorder
Synonyms:
CC2D2A-Related Disorders; CC2D2A-related condition
Identifiers:
MedGen: CN239313

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004746981PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Nov 22, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004746981.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The CC2D2A c.4315-6_4315-3delTCTT variant is predicted to result in an intronic deletion. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.0065% of alleles in individuals of European (Non-Finnish) descent in gnomAD. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 15, 2024