NM_015102.5(NPHP4):c.2482G>C (p.Val828Leu) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 5, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004042128.1

Allele description [Variation Report for NM_015102.5(NPHP4):c.2482G>C (p.Val828Leu)]

NM_015102.5(NPHP4):c.2482G>C (p.Val828Leu)

Gene:

NPHP4:nephrocystin 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.31

Genomic location:

Preferred name:

NM_015102.5(NPHP4):c.2482G>C (p.Val828Leu)

HGVS:

NC_000001.11:g.5887289C>G
NG_011724.2:g.110183G>C
NM_001291593.2:c.943G>C
NM_001291594.2:c.946G>C
NM_015102.3:c.2482G>C
NM_015102.5:c.2482G>CMANE SELECT
NP_001278522.1:p.Val315Leu
NP_001278523.1:p.Val316Leu
NP_055917.1:p.Val828Leu
NC_000001.10:g.5947349C>G
NR_111987.2:n.2699G>C

Protein change:

V315L

Links:

dbSNP: rs774129927

NCBI 1000 Genomes Browser:

rs774129927

Molecular consequence:

NM_001291593.2:c.943G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001291594.2:c.946G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_015102.5:c.2482G>C - missense variant - [Sequence Ontology: SO:0001583]
NR_111987.2:n.2699G>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004990987	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 5, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004990987

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 5, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004990987.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.2482G>C (p.V828L) alteration is located in exon 18 (coding exon 17) of the NPHP4 gene. This alteration results from a G to C substitution at nucleotide position 2482, causing the valine (V) at amino acid position 828 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jan 4, 2025

ClinVar

Relating variation to medicine