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NM_000527.5(LDLR):c.1069G>A (p.Glu357Lys) AND Homozygous familial hypercholesterolemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 7, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004017551.1

Allele description [Variation Report for NM_000527.5(LDLR):c.1069G>A (p.Glu357Lys)]

NM_000527.5(LDLR):c.1069G>A (p.Glu357Lys)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1069G>A (p.Glu357Lys)
Other names:
FH Paris-7; NM_000527.5(LDLR):c.1069G>A
HGVS:
  • NC_000019.10:g.11111522G>A
  • NG_009060.1:g.27142G>A
  • NM_000527.5:c.1069G>AMANE SELECT
  • NM_001195798.2:c.1069G>A
  • NM_001195799.2:c.946G>A
  • NM_001195800.2:c.565G>A
  • NM_001195803.2:c.688G>A
  • NP_000518.1:p.Glu357Lys
  • NP_000518.1:p.Glu357Lys
  • NP_001182727.1:p.Glu357Lys
  • NP_001182728.1:p.Glu316Lys
  • NP_001182729.1:p.Glu189Lys
  • NP_001182732.1:p.Glu230Lys
  • LRG_274t1:c.1069G>A
  • LRG_274:g.27142G>A
  • NC_000019.9:g.11222198G>A
  • NM_000527.4(LDLR):c.1069G>A
  • NM_000527.4:c.1069G>A
  • P01130:p.Glu357Lys
  • c.1069G>A
Protein change:
E189K
Links:
LDLR-LOVD, British Heart Foundation: LDLR_001350; UniProtKB: P01130#VAR_005372; dbSNP: rs879254781
NCBI 1000 Genomes Browser:
rs879254781
Molecular consequence:
  • NM_000527.5:c.1069G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1069G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.946G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.565G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.688G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Homozygous familial hypercholesterolemia
Synonyms:
Familial hypercholesterolemia - homozygous
Identifiers:
MONDO: MONDO:0018328; MedGen: C0342881

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004848233Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jun 7, 2019)
germlineclinical testing

PubMed (12)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Cardiovascular risk in relation to functionality of sequence variants in the gene coding for the low-density lipoprotein receptor: a study among 29,365 individuals tested for 64 specific low-density lipoprotein-receptor sequence variants.

Huijgen R, Kindt I, Defesche JC, Kastelein JJ.

Eur Heart J. 2012 Sep;33(18):2325-30. doi: 10.1093/eurheartj/ehs038. Epub 2012 Mar 4.

PubMed [citation]
PMID:
22390909

Preliminary spectrum of genetic variants in familial hypercholesterolemia in Argentina.

Bañares VG, Corral P, Medeiros AM, Araujo MB, Lozada A, Bustamante J, Cerretini R, López G, Bourbon M, Schreier LE.

J Clin Lipidol. 2017 Mar-Apr;11(2):524-531. doi: 10.1016/j.jacl.2017.02.007. Epub 2017 Feb 28.

PubMed [citation]
PMID:
28502510
See all PubMed Citations (12)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV004848233.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (12)

Description

The p.Glu357Lys variant in LDLR, also known as p.Glu336Lys or FH Paris 7, has been reported in the heterozygous state at least 10 probands with hypercholestrolemia (Hobbs 1992, Lombardi 2000, Huijgen 2010, Fouchier 2014, Banares 2017) and segregated with disease in at least 4 affected family members (Kusters 2013). In addition, this variant was identified in the compound heterozygous state with another pathogenic variant in a child with a severe presentation. It was inherited from his mother who had borderline high cholesterol (Lock 2018). This variant has been identified in multiple individuals in a large cohort from the Netherlands with mutation carriers (n=27) having mean LDL of 6.51 mmol/L compared to family members who were not carriers of the variant (n=100) with mean LDL of 3.37 mmol/L (Fouchier 2014). This variant is absent from large population studies but has been reported in ClinVar (Variation ID # 251649). Computational prediction tools and conservation analysis are consistent with pathogenicity. In summary, this variant meets criteria to be classified as pathogenic for autosomal dominant familial hypercholesterolemia. ACMG/AMP Criteria applied: PS4, PM2, PM3, PP1, PP3.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 13, 2025