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NM_005159.5(ACTC1):c.28C>A (p.Leu10Met) AND Hypertrophic cardiomyopathy

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 10, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003996470.3

Allele description [Variation Report for NM_005159.5(ACTC1):c.28C>A (p.Leu10Met)]

NM_005159.5(ACTC1):c.28C>A (p.Leu10Met)

Genes:
GJD2-DT:GJD2 divergent transcript [Gene - HGNC]
ACTC1:actin alpha cardiac muscle 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q14
Genomic location:
Preferred name:
NM_005159.5(ACTC1):c.28C>A (p.Leu10Met)
Other names:
p.L10M:CTG>ATG
HGVS:
  • NC_000015.10:g.34794781G>T
  • NG_007553.1:g.5946C>A
  • NM_005159.5:c.28C>AMANE SELECT
  • NP_005150.1:p.Leu10Met
  • LRG_388t1:c.28C>A
  • LRG_388:g.5946C>A
  • NC_000015.9:g.35086982G>T
  • NM_005159.4:c.28C>A
  • c.28C>A
Protein change:
L10M
Links:
dbSNP: rs397517057
NCBI 1000 Genomes Browser:
rs397517057
Molecular consequence:
  • NM_005159.5:c.28C>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
11

Condition(s)

Name:
Hypertrophic cardiomyopathy
Synonyms:
HYPERTROPHIC MYOCARDIOPATHY
Identifiers:
MONDO: MONDO:0005045; MeSH: D002312; MedGen: C0007194; Human Phenotype Ontology: HP:0001639

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004844875All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain Significance
(Jul 10, 2024)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown11not providednot provided143475not providedclinical testing

Citations

PubMed

Pediatric cardiomyopathy: importance of genetic and metabolic evaluation.

Kindel SJ, Miller EM, Gupta R, Cripe LH, Hinton RB, Spicer RL, Towbin JA, Ware SM.

J Card Fail. 2012 May;18(5):396-403. doi: 10.1016/j.cardfail.2012.01.017. Epub 2012 Mar 10.

PubMed [citation]
PMID:
22555271
PMCID:
PMC3345128

Uptake of cardiac screening and genetic testing among hypertrophic and dilated cardiomyopathy families.

Miller EM, Wang Y, Ware SM.

J Genet Couns. 2013 Apr;22(2):258-67. doi: 10.1007/s10897-012-9544-4. Epub 2012 Oct 10.

PubMed [citation]
PMID:
23054336
See all PubMed Citations (7)

Details of each submission

From All of Us Research Program, National Institutes of Health, SCV004844875.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided11not providednot providedclinical testing PubMed (7)

Description

This missense variant replaces leucine with methionine at codon 10 of the ACTC1 protein. Computational prediction suggests that this variant may have a deleterious impact on protein structure and function (internally defined REVEL score threshold >= 0.7, PMID: 27666373). To our knowledge, functional studies have not been reported for this variant. This variant has been reported in individuals affected with hypertrophic cardiomyopathy (PMID: 22555271, 23054336, 27532257, 28138913, 35026164; communication with an external laboratory; ClinVar SCV000676951.5). In one case, this variant was reported in an individual affected with hypertrophic cardiomyopathy and poor clinical course who also carried a pathogenic splice variant in the MYBPC3 gene (PMID: 28138913). This variant has also been reported in a young individual affected with ventricular fibrillation and cardiac arrest (PMID: 31246743). This variant has been identified in 9/282084 chromosomes in the general population by the Genome Aggregation Database (gnomAD). The available evidence is insufficient to determine the role of this variant in disease conclusively. Therefore, this variant is classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown143475not providednot provided11not providednot providednot provided

Last Updated: Mar 11, 2025