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NM_001008216.2(GALE):c.151C>T (p.Arg51Trp) AND Thrombocytopenia 13, syndromic

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 5, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003994248.1

Allele description [Variation Report for NM_001008216.2(GALE):c.151C>T (p.Arg51Trp)]

NM_001008216.2(GALE):c.151C>T (p.Arg51Trp)

Gene:
GALE:UDP-galactose-4-epimerase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.11
Genomic location:
Preferred name:
NM_001008216.2(GALE):c.151C>T (p.Arg51Trp)
HGVS:
  • NC_000001.11:g.23798701G>A
  • NG_007068.1:g.7104C>T
  • NM_000403.4:c.151C>T
  • NM_001008216.2:c.151C>TMANE SELECT
  • NM_001127621.2:c.151C>T
  • NP_000394.2:p.Arg51Trp
  • NP_001008217.1:p.Arg51Trp
  • NP_001121093.1:p.Arg51Trp
  • NC_000001.10:g.24125191G>A
  • NM_000403.3:c.151C>T
  • NM_001127621.2:c.151C>T
Protein change:
R51W; ARG51TRP
Links:
OMIM: 606953.0009; dbSNP: rs780517804
NCBI 1000 Genomes Browser:
rs780517804
Molecular consequence:
  • NM_000403.4:c.151C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001008216.2:c.151C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127621.2:c.151C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Thrombocytopenia 13, syndromic
Synonyms:
THROMBOCYTOPENIA, AUTOSOMAL RECESSIVE, 13
Identifiers:
MONDO: MONDO:0958333; MedGen: CN377271; OMIM: 620776

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004809174OMIM
no assertion criteria provided
Pathogenic
(Apr 5, 2024)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Inherited thrombocytopenia associated with mutation of UDP-galactose-4-epimerase (GALE).

Seo A, Gulsuner S, Pierce S, Ben-Harosh M, Shalev H, Walsh T, Krasnov T, Dgany O, Doulatov S, Tamary H, Shimamura A, King MC.

Hum Mol Genet. 2019 Jan 1;28(1):133-142. doi: 10.1093/hmg/ddy334.

PubMed [citation]
PMID:
30247636
PMCID:
PMC6298239

A Case of UDP-Galactose 4'-Epimerase Deficiency Associated with Dyshematopoiesis and Atrioventricular Valve Malformations: An Exceptional Clinical Phenotype Explained by Altered N-Glycosylation with Relative Preservation of the Leloir Pathway.

Febres-Aldana CA, Pelaez L, Wright MS, Maher OM, Febres-Aldana AJ, Sasaki J, Jayakar P, Jayakar A, Diaz-Barbosa M, Janvier M, Totapally B, Salyakina D, Galvez-Silva JR.

Mol Syndromol. 2020 Dec;11(5-6):320-329. doi: 10.1159/000511343. Epub 2020 Oct 29.

PubMed [citation]
PMID:
33510604
PMCID:
PMC7802442

Details of each submission

From OMIM, SCV004809174.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 6 patients from a consanguineous Bedouin family (AH) with syndromic thrombocytopenia-13 (THC13; 620776), Seo et al. (2019) identified a homozygous c.151C-T transition (c.151C-T, NM_001127621) in the GALE gene, resulting in an arg51-to-trp (R51W) substitution at a conserved residue. The mutation, which was found by whole-exome sequencing and confirmed by Sanger sequencing, segregated with the disorder in the family. Studies of patient cells were not performed. In vitro functional expression studies showed that the R51W protein had about 40% residual activity for both interconversion functions compared to wildtype and showed reduced NAD+ binding (41% reduction compared to wildtype). Of note, the mutant protein was able to rescue yeast growth upon galactose challenge in gal10-null yeast (gal10 is the homologous gene to GALE and catalyzes the interconversion of UDP-galactose and UDP-glucose, but not the interconversion of UDP-N-acetylgalactosamine and UDP-N-acetylglucosamine). Accordingly, the patients did not have clinical signs of galactosemia. The melting point of the R51W mutant was lower than controls, indicating thermal instability. The authors postulated that deficiency of glycosylation resulting from decreased levels of GALE due to thermal instability may have a detrimental effect on normal glycosylation and hematopoiesis.

For discussion of the R51W mutation in the GALE gene that was found in compound heterozygous state in a 2-year-old Hispanic boy with THC13 by Febres-Aldana et al. (2020), see 606953.0010.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 4, 2024