NM_001042492.3(NF1):c.5906A>T (p.Gln1969Leu) AND Hereditary cancer

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jan 23, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003491898.1

Allele description [Variation Report for NM_001042492.3(NF1):c.5906A>T (p.Gln1969Leu)]

NM_001042492.3(NF1):c.5906A>T (p.Gln1969Leu)

Gene:

NF1:neurofibromin 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q11.2

Genomic location:

Preferred name:

NM_001042492.3(NF1):c.5906A>T (p.Gln1969Leu)

HGVS:

NC_000017.11:g.31334931A>T
NG_009018.1:g.244955A>T
NM_000267.3:c.5843A>T
NM_001042492.3:c.5906A>TMANE SELECT
NP_000258.1:p.Gln1948Leu
NP_001035957.1:p.Gln1969Leu
NP_001035957.1:p.Gln1969Leu
LRG_214t1:c.5843A>T
LRG_214t2:c.5906A>T
LRG_214:g.244955A>T
LRG_214p1:p.Gln1948Leu
LRG_214p2:p.Gln1969Leu
NC_000017.10:g.29661949A>T
NM_001042492.2:c.5906A>T
p.Q1969L

Protein change:

Q1948L

Links:

dbSNP: rs143502927

NCBI 1000 Genomes Browser:

rs143502927

Molecular consequence:

NM_000267.3:c.5843A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001042492.3:c.5906A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer
Identifiers:: MedGen: C1333600

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000839154	Mendelics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Jan 23, 2024)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000839154

Mendelics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Jan 23, 2024)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Mendelics, SCV000839154.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 23, 2024

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Relating variation to medicine