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NM_000232.5(SGCB):c.-10_16dup (p.Ala6fs) AND Autosomal recessive limb-girdle muscular dystrophy type 2E

Germline classification:
Pathogenic/Likely pathogenic (2 submissions)
Last evaluated:
Mar 25, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003472680.3

Allele description [Variation Report for NM_000232.5(SGCB):c.-10_16dup (p.Ala6fs)]

NM_000232.5(SGCB):c.-10_16dup (p.Ala6fs)

Genes:
LOC129992585:ATAC-STARR-seq lymphoblastoid silent region 15421 [Gene]
SGCB:sarcoglycan beta [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
4q12
Genomic location:
Preferred name:
NM_000232.5(SGCB):c.-10_16dup (p.Ala6fs)
HGVS:
  • NC_000004.12:g.52038251_52038276dup
  • NG_008891.1:g.5051_5076dup
  • NG_172031.1:g.280_305dup
  • NM_000232.5:c.-10_16dupMANE SELECT
  • NP_000223.1:p.Ala6fs
  • NP_000223.1:p.Met(?_1)_Ala3(?)
  • LRG_204t1:c.-17_9dup
  • LRG_204:g.5051_5076dup
  • LRG_204p1:p.Met(?_1)_Ala3(?)
  • NC_000004.11:g.52904417_52904442dup
  • NM_000232.4:c.-10_16dup
  • NM_000232.4:c.-17_9dup
Protein change:
A6fs
Molecular consequence:
  • NM_000232.5:c.-10_16dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_000232.5:c.-10_16dup - initiator_codon_variant - [Sequence Ontology: SO:0001582]

Condition(s)

Name:
Autosomal recessive limb-girdle muscular dystrophy type 2E (LGMDR4)
Synonyms:
Limb-girdle muscular dystrophy, type 2E; Muscular dystrophy limb-girdle with beta-sarcoglycan deficiency; Beta-sarcoglycan limb-girdle muscular dystrophy; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011423; MedGen: C1858593; Orphanet: 119; OMIM: 604286

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004201002Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Mar 25, 2023)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004238352Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Feb 13, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV004201002.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Revvity Omics, Revvity, SCV004238352.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024