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NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp) AND Hereditary cancer-predisposing syndrome

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003445082.1

Allele description [Variation Report for NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp)]

NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp)

Gene:
WRAP53:WD repeat containing antisense to TP53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp)
HGVS:
  • NC_000017.11:g.7702770C>T
  • NG_028245.1:g.21700C>T
  • NM_001143990.2:c.1192C>T
  • NM_001143991.2:c.1192C>T
  • NM_001143992.2:c.1192C>TMANE SELECT
  • NM_018081.2:c.1192C>T
  • NP_001137462.1:p.Arg398Trp
  • NP_001137463.1:p.Arg398Trp
  • NP_001137464.1:p.Arg398Trp
  • NP_060551.2:p.Arg398Trp
  • LRG_375t1:c.1192C>T
  • LRG_375:g.21700C>T
  • LRG_375p1:p.Arg398Trp
  • NC_000017.10:g.7606088C>T
  • NM_001143990.1:c.1192C>T
  • Q9BUR4:p.Arg398Trp
Protein change:
R398W; ARG398TRP
Links:
UniProtKB: Q9BUR4#VAR_065875; OMIM: 612661.0002; dbSNP: rs281865548
NCBI 1000 Genomes Browser:
rs281865548
Molecular consequence:
  • NM_001143990.2:c.1192C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001143991.2:c.1192C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001143992.2:c.1192C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_018081.2:c.1192C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004174258Hauer Lab, Department Of Pediatric Oncology, Technical University Munich
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenicgermlineresearch

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes11not provided139not providedresearch

Citations

PubMed

A clinical screening tool to detect genetic cancer predisposition in pediatric oncology shows high sensitivity but can miss a substantial percentage of affected children.

Friedrich UA, Bienias M, Zinke C, Prazenicova M, Lohse J, Jahn A, Menzel M, Langanke J, Walter C, Wagener R, Brozou T, Varghese J, Dugas M, Erlacher M, Schröck E, Suttorp M, Borkhardt A, Hauer J, Auer F.

Genet Med. 2023 Aug;25(8):100875. doi: 10.1016/j.gim.2023.100875. Epub 2023 May 3.

PubMed [citation]
PMID:
37149759

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Hauer Lab, Department Of Pediatric Oncology, Technical University Munich, SCV004174258.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (2)

Description

ACMG/AMP, PVS1, PM2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes139not providednot provided1not provided1not provided

Last Updated: Apr 7, 2025