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NM_000352.6(ABCC8):c.928G>A (p.Asp310Asn) AND Hyperinsulinemic hypoglycemia, familial, 1

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Aug 16, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003321726.5

Allele description [Variation Report for NM_000352.6(ABCC8):c.928G>A (p.Asp310Asn)]

NM_000352.6(ABCC8):c.928G>A (p.Asp310Asn)

Gene:
ABCC8:ATP binding cassette subfamily C member 8 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.1
Genomic location:
Preferred name:
NM_000352.6(ABCC8):c.928G>A (p.Asp310Asn)
Other names:
NM_000352.6(ABCC8):c.928G>A; p.Asp310Asn
HGVS:
  • NC_000011.10:g.17460571C>T
  • NG_008867.1:g.21332G>A
  • NM_000352.6:c.928G>AMANE SELECT
  • NM_001287174.3:c.928G>A
  • NM_001351295.2:c.928G>A
  • NM_001351296.2:c.925G>A
  • NM_001351297.2:c.925G>A
  • NP_000343.2:p.Asp310Asn
  • NP_001274103.1:p.Asp310Asn
  • NP_001338224.1:p.Asp310Asn
  • NP_001338225.1:p.Asp309Asn
  • NP_001338226.1:p.Asp309Asn
  • LRG_790t1:c.928G>A
  • LRG_790t2:c.928G>A
  • LRG_790:g.21332G>A
  • LRG_790p1:p.Asp310Asn
  • LRG_790p2:p.Asp310Asn
  • NC_000011.9:g.17482118C>T
  • NM_000352.3:c.928G>A
  • NM_000352.4:c.928G>A
  • NR_147094.2:n.994G>A
Protein change:
D309N
Links:
dbSNP: rs769569410
NCBI 1000 Genomes Browser:
rs769569410
Molecular consequence:
  • NM_000352.6:c.928G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001287174.3:c.928G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351295.2:c.928G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351296.2:c.925G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351297.2:c.925G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_147094.2:n.994G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hyperinsulinemic hypoglycemia, familial, 1 (HHF1)
Synonyms:
HYPERINSULINISM, FAMILIAL, WITH PANCREATIC NESIDIOBLASTOSIS; HYPOGLYCEMIA, HYPERINSULINEMIC, OF INFANCY; NESIDIOBLASTOSIS OF PANCREAS; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009734; MedGen: C2931832; Orphanet: 276575; Orphanet: 276598; OMIM: 256450

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004026573Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Aug 16, 2023)
germlinecuration

PubMed (2)
[See all records that cite these PMIDs]

SCV005416373Juno Genomics, Hangzhou Juno Genomics, Inc
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenicgermlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedcuration

Citations

PubMed

Role of Hsp90 in biogenesis of the beta-cell ATP-sensitive potassium channel complex.

Yan FF, Pratt EB, Chen PC, Wang F, Skach WR, David LL, Shyng SL.

Mol Biol Cell. 2010 Jun 15;21(12):1945-54. Epub 2010 Apr 28.

PubMed [citation]
PMID:
20427569
PMCID:
PMC2883939

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard, SCV004026573.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcuration PubMed (2)

Description

The p.Asp310Asn variant in ABCC8 has been previously reported in 3 individuals with hyperinsulinemic hypoglycemia (PMID: 16429405, 17236890, 27908292) and has been seen in 0.006% (2/34590) of Latino/Admixed American chromosomes by the Genome Aggregation Database (gnomAD, http://gnomad.broadinstitute.org; dbSNP: rs769569410). Although this variant has been seen in the general population in a heterozygous state, its frequency is low enough to be consistent with a recessive carrier frequency. This variant has also been reported in ClinVar (Variation ID: 585352) and has been interpreted as likely pathogenic by Fulgent Genetics, DASA, Natera Inc, Athena Diagnostics Inc, and Invitae. Of the 3 affected individuals, 1 was a compound heterozygote that carried a reported likely pathogenic variants in trans, which increases the likelihood that the p.Asp310Asn variant is pathogenic (PMID: 17236890). In vitro functional studies provide some evidence that the p.Asp310Asn variant may slightly impact protein function (PMID: 18596924, 20427569). However, these types of assays may not accurately represent biological function. Computational prediction tools and conservation analyses suggest that this variant may impact the protein, though this information is not predictive enough to determine pathogenicity. In summary, although additional studies are required to fully establish its clinical significance, this variant is likely pathogenic for autosomal recessive hyperinsulinemic hypoglycemia. ACMG/AMP Criteria applied: PM3, PP3, PM2, PS3_supporting (Richards 2015).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Juno Genomics, Hangzhou Juno Genomics, Inc, SCV005416373.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PM2_Supporting+PP3_Moderate+PS4_Moderate+PP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2025