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NM_000138.5(FBN1):c.3146G>A (p.Gly1049Asp) AND Marfan Syndrome/Loeys-Dietz Syndrome/Familial Thoracic Aortic Aneurysms and Dissections

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 21, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003317292.8

Allele description [Variation Report for NM_000138.5(FBN1):c.3146G>A (p.Gly1049Asp)]

NM_000138.5(FBN1):c.3146G>A (p.Gly1049Asp)

Gene:
FBN1:fibrillin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q21.1
Genomic location:
Preferred name:
NM_000138.5(FBN1):c.3146G>A (p.Gly1049Asp)
HGVS:
  • NC_000015.10:g.48488430C>T
  • NG_008805.2:g.162359G>A
  • NM_000138.5:c.3146G>AMANE SELECT
  • NP_000129.3:p.Gly1049Asp
  • NP_000129.3:p.Gly1049Asp
  • LRG_778t1:c.3146G>A
  • LRG_778:g.162359G>A
  • LRG_778p1:p.Gly1049Asp
  • NC_000015.9:g.48780627C>T
  • NM_000138.4:c.3146G>A
Protein change:
G1049D
Links:
dbSNP: rs1555398670
NCBI 1000 Genomes Browser:
rs1555398670
Molecular consequence:
  • NM_000138.5:c.3146G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Marfan Syndrome/Loeys-Dietz Syndrome/Familial Thoracic Aortic Aneurysms and Dissections
Identifiers:
MedGen: CN229799

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000695503Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Likely pathogenic
(Jun 21, 2023)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular characterization and investigation of the role of genetic variation in phenotypic variability and response to treatment in a large pediatric Marfan syndrome cohort.

Meester JAN, Peeters S, Van Den Heuvel L, Vandeweyer G, Fransen E, Cappella E, Dietz HC, Forbus G, Gelb BD, Goldmuntz E, Hoskoppal A, Landstrom AP, Lee T, Mital S, Morris S, Olson AK, Renard M, Roden DM, Singh MN, Selamet Tierney ES, Tretter JT, Van Driest SL, et al.

Genet Med. 2022 May;24(5):1045-1053. doi: 10.1016/j.gim.2021.12.015. Epub 2022 Jan 17.

PubMed [citation]
PMID:
35058154
PMCID:
PMC9680912

Evaluating the monogenic contribution and genotype-phenotype correlation in patients with isolated thoracic aortic aneurysm.

Li Y, Kong Y, Duan W, Yu S, Zhou X, Hu Y, Ou JS, Yi D, Xie J, Zhu J, Sun L, Li Y, Du J.

Eur J Hum Genet. 2021 Jul;29(7):1129-1138. doi: 10.1038/s41431-021-00857-2. Epub 2021 Apr 6.

PubMed [citation]
PMID:
33824467
PMCID:
PMC8298584

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000695503.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)

Description

Variant summary: FBN1 c.3146G>A (p.Gly1049Asp) results in a non-conservative amino acid change located in the EGF-like domain (IPR000742) of the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 251486 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.3146G>A has been reported in the literature as a likely pathogenic variant in an individual affected with Marfan Syndrome and as a VUS in an individual affected with isolated thoracic aortic aneurysm (example, Meester_2021, Li_2021). It has also been observed to segregate with features of Marfan disease among individual(s) from a family referred for Marfan testing at our laboratory. These data indicate that the variant is likely to be associated with disease. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 33824467, 35058154). Three submitters have cited clinical-significance assessments for this variant to ClinVar after 2014 and classified as VUS (n=1) and likely pathogenic (n=2). Based on the evidence outlined above, the variant was classified as likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 24, 2024