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NM_014112.5(TRPS1):c.769C>T (p.Arg257Ter) AND TRPS1-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 25, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003314028.1

Allele description [Variation Report for NM_014112.5(TRPS1):c.769C>T (p.Arg257Ter)]

NM_014112.5(TRPS1):c.769C>T (p.Arg257Ter)

Gene:
TRPS1:transcriptional repressor GATA binding 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q23.3
Genomic location:
Preferred name:
NM_014112.5(TRPS1):c.769C>T (p.Arg257Ter)
HGVS:
  • NC_000008.11:g.115619329G>A
  • NG_012383.3:g.54673C>T
  • NM_001282902.3:c.742C>T
  • NM_001282903.3:c.748C>T
  • NM_001330599.2:c.730C>T
  • NM_014112.5:c.769C>TMANE SELECT
  • NP_001269831.1:p.Arg248Ter
  • NP_001269832.1:p.Arg250Ter
  • NP_001317528.1:p.Arg244Ter
  • NP_054831.2:p.Arg257Ter
  • NC_000008.10:g.116631556G>A
  • NM_014112.4:c.769C>T
Protein change:
R244*
Links:
dbSNP: rs2130531352
NCBI 1000 Genomes Browser:
rs2130531352
Molecular consequence:
  • NM_001282902.3:c.742C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001282903.3:c.748C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001330599.2:c.730C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_014112.5:c.769C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
TRPS1-related disorder
Synonyms:
TRPS1-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004013432Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Apr 25, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Greenwood Genetic Center Diagnostic Laboratories, Greenwood Genetic Center, SCV004013432.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

PVS1, PS4_Supporting, PM2, PM6

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024