NM_033629.6(TREX1):c.907A>C (p.Thr303Pro) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Nov 3, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003237442.9

Allele description [Variation Report for NM_033629.6(TREX1):c.907A>C (p.Thr303Pro)]

NM_033629.6(TREX1):c.907A>C (p.Thr303Pro)

Genes:

ATRIP:ATR interacting protein [Gene - OMIM - HGNC]
ATRIP-TREX1:ATRIP-TREX1 readthrough [Gene]
TREX1:three prime repair exonuclease 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_033629.6(TREX1):c.907A>C (p.Thr303Pro)

HGVS:

NC_000003.12:g.48467562A>C
NG_009820.2:g.6733A>C
NG_033100.1:g.38299T>G
NG_033100.2:g.42248T>G
NG_041782.1:g.25853A>C
NG_099340.1:g.623A>C
NM_001271022.2:c.*2008A>C
NM_001271023.2:c.*2008A>C
NM_007248.5:c.877A>C
NM_032166.4:c.*2008A>C
NM_033629.6:c.907A>CMANE SELECT
NM_130384.3:c.*2008A>CMANE SELECT
NP_009179.2:p.Thr293Pro
NP_338599.1:p.Thr303Pro
NP_338599.1:p.Thr303Pro
LRG_282t1:c.907A>C
AAK07616.1:p.Thr303Pro
AF319569.1:c.907A>C
LRG_282:g.6733A>C
LRG_282p1:p.Thr303Pro
NC_000003.11:g.48508961A>C
NM_033629.4:c.907A>C
NR_153405.1:n.4216A>C
Q9NSU2:p.Thr358Pro

Protein change:

T293P

Links:

UniProtKB: Q9NSU2#VAR_070902; dbSNP: rs76224909

NCBI 1000 Genomes Browser:

rs76224909

Molecular consequence:

NM_001271022.2:c.*2008A>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001271023.2:c.*2008A>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_032166.4:c.*2008A>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_130384.3:c.*2008A>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_007248.5:c.877A>C - missense variant - [Sequence Ontology: SO:0001583]
NM_033629.6:c.907A>C - missense variant - [Sequence Ontology: SO:0001583]
NR_153405.1:n.4216A>C - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002011133	Institute for Clinical Genetics, University Hospital TU Dresden, University Hospital TU Dresden	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Nov 3, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002011133

Institute for Clinical Genetics, University Hospital TU Dresden, University Hospital TU Dresden

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Nov 3, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	not provided	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Institute for Clinical Genetics, University Hospital TU Dresden, University Hospital TU Dresden, SCV002011133.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	not provided	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 24, 2024

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