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NM_015443.4(KANSL1):c.3236C>T (p.Ala1079Val) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 22, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:

Allele description [Variation Report for NM_015443.4(KANSL1):c.3236C>T (p.Ala1079Val)]

NM_015443.4(KANSL1):c.3236C>T (p.Ala1079Val)

KANSL1:KAT8 regulatory NSL complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Genomic location:
Preferred name:
NM_015443.4(KANSL1):c.3236C>T (p.Ala1079Val)
  • NC_000017.11:g.46031558G>A
  • NG_032784.1:g.198817C>T
  • NM_001193465.2:c.3233C>T
  • NM_001193466.2:c.3236C>T
  • NM_001379198.1:c.3236C>T
  • NM_015443.4:c.3236C>TMANE SELECT
  • NP_001180394.1:p.Ala1078Val
  • NP_001180395.1:p.Ala1079Val
  • NP_001366127.1:p.Ala1079Val
  • NP_056258.1:p.Ala1079Val
  • NC_000017.10:g.44108924G>A
  • NM_001193466.1:c.3236C>T
Protein change:
dbSNP: rs370112084
NCBI 1000 Genomes Browser:
Molecular consequence:
  • NM_001193465.2:c.3233C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001193466.2:c.3236C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379198.1:c.3236C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_015443.4:c.3236C>T - missense variant - [Sequence Ontology: SO:0001583]


Inborn genetic diseases
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
SCV003905469Ambry Genetics
criteria provided, single submitter

(Ambry General Variant Classification Scheme_2022)
Uncertain significance
(Feb 22, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003905469.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided


The c.3236C>T (p.A1079V) alteration is located in exon 15 (coding exon 14) of the KANSL1 gene. This alteration results from a C to T substitution at nucleotide position 3236, causing the alanine (A) at amino acid position 1079 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 14, 2024