NM_000203.5(IDUA):c.406G>A (p.Ala136Thr) AND not provided

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Apr 16, 2023
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003132322.4

Allele description [Variation Report for NM_000203.5(IDUA):c.406G>A (p.Ala136Thr)]

NM_000203.5(IDUA):c.406G>A (p.Ala136Thr)

Gene:

IDUA:alpha-L-iduronidase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4p16.3

Genomic location:

Preferred name:

NM_000203.5(IDUA):c.406G>A (p.Ala136Thr)

HGVS:

NC_000004.12:g.1000902G>A
NG_008103.1:g.18906G>A
NM_000203.5:c.406G>AMANE SELECT
NM_001363576.1:c.10G>A
NP_000194.2:p.Ala136Thr
NP_001350505.1:p.Ala4Thr
LRG_1277t1:c.406G>A
LRG_1277:g.18906G>A
LRG_1277p1:p.Ala136Thr
NC_000004.11:g.994690G>A
NC_000004.11:g.994690G>A
NM_000203.3:c.406G>A
NM_000203.4:c.406G>A
NR_110313.1:n.494G>A

Protein change:

A136T

Links:

dbSNP: rs112571714

NCBI 1000 Genomes Browser:

rs112571714

Molecular consequence:

NM_000203.5:c.406G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001363576.1:c.10G>A - missense variant - [Sequence Ontology: SO:0001583]
NR_110313.1:n.494G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003817587	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Apr 16, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV004040262	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Mar 24, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003817587

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Apr 16, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004040262

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Mar 24, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV003817587.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From GeneDx, SCV004040262.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

In silico analysis supports that this missense variant does not alter protein structure/function; Observed with pathogenic variant, phase unknown, in a patient with features suggestive of a non-ciliopathy multisystemic condition, but additional clinical information was not provided (Best et al., 2022); This variant is associated with the following publications: (PMID: 34716235)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine