NM_177559.3(CSNK2A1):c.583C>T (p.Arg195Ter) AND Autism spectrum disorder

Germline classification:: Likely pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003127746.2

Allele description [Variation Report for NM_177559.3(CSNK2A1):c.583C>T (p.Arg195Ter)]

NM_177559.3(CSNK2A1):c.583C>T (p.Arg195Ter)

Gene:

CSNK2A1:casein kinase 2 alpha 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20p13

Genomic location:

Preferred name:

NM_177559.3(CSNK2A1):c.583C>T (p.Arg195Ter)

HGVS:

NC_000020.11:g.492292G>A
NG_011970.2:g.56547C>T
NM_001362770.2:c.583C>T
NM_001362771.2:c.583C>T
NM_001895.4:c.583C>T
NM_177559.3:c.583C>TMANE SELECT
NM_177560.2:c.175C>T
NM_177560.3:c.175C>T
NP_001349699.1:p.Arg195Ter
NP_001349700.1:p.Arg195Ter
NP_001886.1:p.Arg195Ter
NP_808227.1:p.Arg195Ter
NP_808228.1:p.Arg59Ter
NC_000020.10:g.472936G>A
NG_011970.1:g.56547C>T
NM_001895.3:c.583C>T

Protein change:

R195*

Links:

dbSNP: rs1034583315

Molecular consequence:

NM_001362770.2:c.583C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001362771.2:c.583C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_001895.4:c.583C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_177559.3:c.583C>T - nonsense - [Sequence Ontology: SO:0001587]
NM_177560.3:c.175C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Autism spectrum disorder
Synonyms:: Autism spectrum disorders
Identifiers:: MONDO: MONDO:0005258; MeSH: D000067877; MedGen: C1510586

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003804093	Department of Genetics, Rouen University Hospital, Normandy Center for Genomic and Personalized Medicine	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003804093

Department of Genetics, Rouen University Hospital, Normandy Center for Genomic and Personalized Medicine

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Department of Genetics, Rouen University Hospital, Normandy Center for Genomic and Personalized Medicine, SCV003804093.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 27, 2025

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