NM_002667.5(PLN):c.126_127del (p.Leu43fs) AND Dilated cardiomyopathy 1P

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 22, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003099900.2

Allele description [Variation Report for NM_002667.5(PLN):c.126_127del (p.Leu43fs)]

NM_002667.5(PLN):c.126_127del (p.Leu43fs)

Genes:

CEP85L:centrosomal protein 85 like [Gene - OMIM - HGNC]
PLN:phospholamban [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

6q22.31

Genomic location:

Preferred name:

NM_002667.5(PLN):c.126_127del (p.Leu43fs)

HGVS:

NC_000006.12:g.118559045CT[1]
NG_009082.1:g.15767CT[1]
NG_021248.1:g.156029GA[1]
NM_001042475.3:c.1020+6484_1020+6485delMANE SELECT
NM_001178035.2:c.1029+6484_1029+6485del
NM_002667.5:c.126_127delMANE SELECT
NM_206921.3:c.1020+6484_1020+6485del
NP_002658.1:p.Leu43Alafs
NP_002658.1:p.Leu43fs
LRG_390t1:c.124_125CT[1]
LRG_390:g.15767CT[1]
LRG_390p1:p.Leu43Alafs
NC_000006.11:g.118880207_118880208del
NC_000006.11:g.118880208CT[1]
NM_002667.3:c.124_125CT[1]
NM_002667.3:c.126_127delCT

Protein change:

L43fs

Molecular consequence:

NM_002667.5:c.126_127del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001042475.3:c.1020+6484_1020+6485del - intron variant - [Sequence Ontology: SO:0001627]
NM_001178035.2:c.1029+6484_1029+6485del - intron variant - [Sequence Ontology: SO:0001627]
NM_206921.3:c.1020+6484_1020+6485del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Dilated cardiomyopathy 1P (CMD1P)
Identifiers:: MONDO: MONDO:0012362; MedGen: C1835928; Orphanet: 154; OMIM: 609909

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003232819	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Aug 22, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003232819

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Aug 22, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV003232819.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant has not been reported in the literature in individuals affected with PLN-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change results in a frameshift in the PLN gene (p.Leu43Alafs*17). While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 10 amino acid(s) of the PLN protein and extend the protein by 6 additional amino acid residues. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 20, 2024

ClinVar

Relating variation to medicine