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NM_001033855.3(DCLRE1C):c.1990C>T (p.Arg664Ter) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 7, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002499401.2

Allele description [Variation Report for NM_001033855.3(DCLRE1C):c.1990C>T (p.Arg664Ter)]

NM_001033855.3(DCLRE1C):c.1990C>T (p.Arg664Ter)

Gene:
DCLRE1C:DNA cross-link repair 1C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10p13
Genomic location:
Preferred name:
NM_001033855.3(DCLRE1C):c.1990C>T (p.Arg664Ter)
HGVS:
  • NC_000010.11:g.14908497G>A
  • NG_007276.1:g.50599C>T
  • NM_001033855.3:c.1990C>TMANE SELECT
  • NM_001033857.3:c.1630C>T
  • NM_001033858.3:c.1630C>T
  • NM_001289076.2:c.1645C>T
  • NM_001289077.2:c.1630C>T
  • NM_001289078.2:c.1645C>T
  • NM_001289079.2:c.1630C>T
  • NM_001350965.2:c.1782+208C>T
  • NM_001350966.2:c.1437+208C>T
  • NM_001350967.2:c.1422+208C>T
  • NM_022487.4:c.1645C>T
  • NP_001029027.1:p.Arg664Ter
  • NP_001029029.1:p.Arg544Ter
  • NP_001029030.1:p.Arg544Ter
  • NP_001276005.1:p.Arg549Ter
  • NP_001276006.1:p.Arg544Ter
  • NP_001276007.1:p.Arg549Ter
  • NP_001276008.1:p.Arg544Ter
  • NP_071932.2:p.Arg549Ter
  • LRG_54:g.50599C>T
  • NC_000010.10:g.14950496G>A
  • NC_000010.10:g.14950496G>A
  • NM_001033855.2:c.1990C>T
  • NM_022487.4:c.1645C>T
  • NR_110297.2:n.2429C>T
  • NR_146961.2:n.2170C>T
  • NR_146962.1:n.2477C>T
Protein change:
R544*
Links:
dbSNP: rs200693133
NCBI 1000 Genomes Browser:
rs200693133
Molecular consequence:
  • NM_001350965.2:c.1782+208C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001350966.2:c.1437+208C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001350967.2:c.1422+208C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NR_110297.2:n.2429C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146961.2:n.2170C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146962.1:n.2477C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001033855.3:c.1990C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001033857.3:c.1630C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001033858.3:c.1630C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289076.2:c.1645C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289077.2:c.1630C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289078.2:c.1645C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001289079.2:c.1630C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_022487.4:c.1645C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Severe combined immunodeficiency due to DCLRE1C deficiency (RS-SCID)
Synonyms:
Severe combined immunodeficiency with sensitivity to ionizing radiation; SCID, AUTOSOMAL RECESSIVE, T CELL-NEGATIVE, B CELL-NEGATIVE, NK CELL-POSITIVE, WITH SENSITIVITY TO IONIZING RADIATION
Identifiers:
MONDO: MONDO:0011225; MedGen: C1865370; Orphanet: 275; OMIM: 602450
Name:
Histiocytic medullary reticulosis
Synonyms:
SEVERE COMBINED IMMUNODEFICIENCY WITH HYPEREOSINOPHILIA; Omenn syndrome; Reticuloendotheliosis familial with eosinophilia
Identifiers:
MONDO: MONDO:0011338; MedGen: C2700553; Orphanet: 39041; OMIM: 603554

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002792384Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Feb 7, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002792384.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 7, 2025