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NM_000400.4(ERCC2):c.687C>T (p.Ala229=) AND Inborn genetic diseases

Germline classification:
Likely benign (1 submission)
Last evaluated:
Feb 12, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002363367.2

Allele description [Variation Report for NM_000400.4(ERCC2):c.687C>T (p.Ala229=)]

NM_000400.4(ERCC2):c.687C>T (p.Ala229=)

Gene:
ERCC2:ERCC excision repair 2, TFIIH core complex helicase subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.32
Genomic location:
Preferred name:
NM_000400.4(ERCC2):c.687C>T (p.Ala229=)
HGVS:
  • NC_000019.10:g.45364455G>A
  • NG_007067.2:g.11133C>T
  • NM_000400.4:c.687C>TMANE SELECT
  • NM_001130867.2:c.615C>T
  • NP_000391.1:p.Ala229=
  • NP_001124339.1:p.Ala205=
  • LRG_461t1:c.687C>T
  • LRG_461:g.11133C>T
  • NC_000019.9:g.45867713G>A
  • NM_000400.3:c.687C>T
Links:
dbSNP: rs34021577
NCBI 1000 Genomes Browser:
rs34021577
Molecular consequence:
  • NM_000400.4:c.687C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130867.2:c.615C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002666122Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Feb 12, 2022) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002666122.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 20, 2025