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NM_004646.4(NPHS1):c.1379G>A (p.Arg460Gln) AND Kidney disorder

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 12, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002294008.3

Allele description [Variation Report for NM_004646.4(NPHS1):c.1379G>A (p.Arg460Gln)]

NM_004646.4(NPHS1):c.1379G>A (p.Arg460Gln)

Gene:
NPHS1:NPHS1 adhesion molecule, nephrin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.12
Genomic location:
Preferred name:
NM_004646.4(NPHS1):c.1379G>A (p.Arg460Gln)
HGVS:
  • NC_000019.10:g.35848102C>T
  • NG_013356.2:g.26186G>A
  • NG_051206.1:g.1468C>T
  • NM_004646.4:c.1379G>AMANE SELECT
  • NP_004637.1:p.Arg460Gln
  • NP_004637.1:p.Arg460Gln
  • LRG_693t1:c.1379G>A
  • LRG_693:g.26186G>A
  • LRG_693p1:p.Arg460Gln
  • NC_000019.9:g.36339004C>T
  • NM_004646.3:c.1379G>A
  • O60500:p.Arg460Gln
Protein change:
R460Q
Links:
UniProtKB: O60500#VAR_064209; dbSNP: rs386833880
NCBI 1000 Genomes Browser:
rs386833880
Molecular consequence:
  • NM_004646.4:c.1379G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Kidney disorder
Synonyms:
Nephropathy; Kidney disease; Kidney Diseases
Identifiers:
MONDO: MONDO:0005240; MedGen: C0022658; Human Phenotype Ontology: HP:0000112

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002587197Genome Diagnostics Laboratory, The Hospital for Sick Children
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Dec 12, 2016)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002587197.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 17, 2024