NM_003126.4(SPTA1):c.660T>A (p.Tyr220Ter) AND Hereditary spherocytosis type 3

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Mar 1, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002291000.1

Allele description [Variation Report for NM_003126.4(SPTA1):c.660T>A (p.Tyr220Ter)]

NM_003126.4(SPTA1):c.660T>A (p.Tyr220Ter)

Gene:

SPTA1:spectrin alpha, erythrocytic 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q23.1

Genomic location:

Preferred name:

NM_003126.4(SPTA1):c.660T>A (p.Tyr220Ter)

HGVS:

NC_000001.11:g.158680601A>T
NG_011474.1:g.11116T>A
NM_003126.4:c.660T>AMANE SELECT
NP_003117.2:p.Tyr220Ter
LRG_1131:g.11116T>A
NC_000001.10:g.158650391A>T
NM_003126.2:c.660T>A
p.Tyr220*

Protein change:

Y220*

Links:

dbSNP: rs2101942740

NCBI 1000 Genomes Browser:

rs2101942740

Molecular consequence:

NM_003126.4:c.660T>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:: Hereditary spherocytosis type 3
Synonyms:: Spherocytosis type 3; SPTA1-Related Spherocytosis
Identifiers:: MONDO: MONDO:0010053; MedGen: C2678338; Orphanet: 822; OMIM: 270970

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002500022	Jiangsu Institute of Hematology, the First Affiliated Hospital of Soochow University	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Mar 1, 2022)	inherited	research	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002500022

Jiangsu Institute of Hematology, the First Affiliated Hospital of Soochow University

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Mar 1, 2022)

inherited

research

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	inherited	yes	not provided	not provided	not provided	not provided	not provided	research

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Jiangsu Institute of Hematology, the First Affiliated Hospital of Soochow University, SCV002500022.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	research	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	inherited	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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