U.S. flag

An official website of the United States government

NM_002834.5(PTPN11):c.179G>T (p.Gly60Val) AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 27, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002287357.1

Allele description [Variation Report for NM_002834.5(PTPN11):c.179G>T (p.Gly60Val)]

NM_002834.5(PTPN11):c.179G>T (p.Gly60Val)

Gene:
PTPN11:protein tyrosine phosphatase non-receptor type 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.13
Genomic location:
Preferred name:
NM_002834.5(PTPN11):c.179G>T (p.Gly60Val)
Other names:
p.G60V
HGVS:
  • NC_000012.12:g.112450359G>T
  • NG_007459.1:g.36628G>T
  • NM_001330437.2:c.179G>T
  • NM_001374625.1:c.176G>T
  • NM_002834.5:c.179G>TMANE SELECT
  • NM_080601.3:c.179G>T
  • NP_001317366.1:p.Gly60Val
  • NP_001361554.1:p.Gly59Val
  • NP_002825.3:p.Gly60Val
  • NP_542168.1:p.Gly60Val
  • LRG_614t1:c.179G>T
  • LRG_614:g.36628G>T
  • NC_000012.11:g.112888163G>T
  • NM_001330437.2:c.179G>T
  • NM_002834.3:c.179G>T
  • NM_080601.1:c.179G>T
  • Q06124:p.Gly60Val
Protein change:
G59V
Links:
UniProtKB: Q06124#VAR_015990; dbSNP: rs397507509
NCBI 1000 Genomes Browser:
rs397507509
Molecular consequence:
  • NM_001330437.2:c.179G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374625.1:c.176G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002834.5:c.179G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080601.3:c.179G>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002577797Institute of Human Genetics, University Hospital Muenster
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Feb 27, 2019)
de novoclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

PTPN11 mutations in Noonan syndrome: molecular spectrum, genotype-phenotype correlation, and phenotypic heterogeneity.

Tartaglia M, Kalidas K, Shaw A, Song X, Musat DL, van der Burgt I, Brunner HG, Bertola DR, Crosby A, Ion A, Kucherlapati RS, Jeffery S, Patton MA, Gelb BD.

Am J Hum Genet. 2002 Jun;70(6):1555-63. Epub 2002 May 1.

PubMed [citation]
PMID:
11992261
PMCID:
PMC379142

Cancer risk in patients with Noonan syndrome carrying a PTPN11 mutation.

Jongmans MC, van der Burgt I, Hoogerbrugge PM, Noordam K, Yntema HG, Nillesen WM, Kuiper RP, Ligtenberg MJ, van Kessel AG, van Krieken JH, Kiemeney LA, Hoogerbrugge N.

Eur J Hum Genet. 2011 Aug;19(8):870-4. doi: 10.1038/ejhg.2011.37. Epub 2011 Mar 16.

PubMed [citation]
PMID:
21407260
PMCID:
PMC3172922
See all PubMed Citations (5)

Details of each submission

From Institute of Human Genetics, University Hospital Muenster, SCV002577797.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (5)

Description

ACMG categories: PS2,PM1,PM2,PP3,PP5

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Feb 25, 2025