NM_004985.5(KRAS):c.53C>T (p.Ala18Val) AND Noonan syndrome 3

Germline classification:: Pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002264903.1

Allele description [Variation Report for NM_004985.5(KRAS):c.53C>T (p.Ala18Val)]

NM_004985.5(KRAS):c.53C>T (p.Ala18Val)

Gene:

KRAS:KRAS proto-oncogene, GTPase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12p12.1

Genomic location:

Preferred name:

NM_004985.5(KRAS):c.53C>T (p.Ala18Val)

HGVS:

NC_000012.12:g.25245332G>A
NG_007524.2:g.10672C>T
NM_001369786.1:c.53C>T
NM_001369787.1:c.53C>T
NM_004985.5:c.53C>TMANE SELECT
NM_033360.4:c.53C>T
NP_001356715.1:p.Ala18Val
NP_001356716.1:p.Ala18Val
NP_004976.2:p.Ala18Val
NP_203524.1:p.Ala18Val
LRG_344t1:c.53C>T
LRG_344t2:c.53C>T
LRG_344:g.10672C>T
LRG_344p1:p.Ala18Val
LRG_344p2:p.Ala18Val
NC_000012.11:g.25398266G>A
NM_033360.3:c.53C>T

Protein change:

A18V

Links:

dbSNP: rs2135806030

NCBI 1000 Genomes Browser:

rs2135806030

Molecular consequence:

NM_001369786.1:c.53C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369787.1:c.53C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_004985.5:c.53C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_033360.4:c.53C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Noonan syndrome 3 (NS3)
Synonyms:: KRAS gene related Noonan syndrome
Identifiers:: MONDO: MONDO:0012371; MedGen: C1860991; Orphanet: 648; OMIM: 609942

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002546509	Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic	de novo	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002546509

Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic

de novo

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	de novo	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+, SCV002546509.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1		not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	de novo	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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