NM_012388.4(BLOC1S6):c.501A>T (p.Arg167Ser) AND Autoinflammatory syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 12, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002264021.3

Allele description [Variation Report for NM_012388.4(BLOC1S6):c.501A>T (p.Arg167Ser)]

NM_012388.4(BLOC1S6):c.501A>T (p.Arg167Ser)

Gene:

BLOC1S6:biogenesis of lysosomal organelles complex 1 subunit 6 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q21.1

Genomic location:

Preferred name:

NM_012388.4(BLOC1S6):c.501A>T (p.Arg167Ser)

HGVS:

NC_000015.10:g.45606496A>T
NG_028194.2:g.24278A>T
NM_001311255.1:c.516A>T
NM_001311256.1:c.*152A>T
NM_012388.4:c.501A>TMANE SELECT
NP_001298184.1:p.Arg172Ser
NP_036520.1:p.Arg167Ser
NP_036520.1:p.Arg167Ser
LRG_883t1:c.501A>T
LRG_883:g.24278A>T
LRG_883p1:p.Arg167Ser
NC_000015.9:g.45898694A>T
NM_012388.2:c.501A>T
NM_012388.3:c.501A>T
NR_132350.1:n.830A>T
NR_132351.2:n.562A>T
NR_132352.2:n.478A>T
NR_132353.1:n.680A>T
NR_132354.1:n.676A>T
NR_132355.2:n.336A>T
NR_132356.2:n.524A>T
NR_132357.2:n.437A>T
NR_132358.1:n.426A>T
NR_132359.2:n.294A>T

Protein change:

R167S

Links:

dbSNP: rs775510569

NCBI 1000 Genomes Browser:

rs775510569

Molecular consequence:

NM_001311256.1:c.*152A>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001311255.1:c.516A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_012388.4:c.501A>T - missense variant - [Sequence Ontology: SO:0001583]
NR_132350.1:n.830A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132351.2:n.562A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132352.2:n.478A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132353.1:n.680A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132354.1:n.676A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132355.2:n.336A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132356.2:n.524A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132357.2:n.437A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132358.1:n.426A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_132359.2:n.294A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Autoinflammatory syndrome
Identifiers:: MONDO: MONDO:0019751; MedGen: C3890737

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002543109	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Dec 12, 2016)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002543109

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Dec 12, 2016)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002543109.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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