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NM_000053.4(ATP7B):c.4135C>T (p.Pro1379Ser) AND See cases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 23, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002252001.4

Allele description [Variation Report for NM_000053.4(ATP7B):c.4135C>T (p.Pro1379Ser)]

NM_000053.4(ATP7B):c.4135C>T (p.Pro1379Ser)

Gene:
ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q14.3
Genomic location:
Preferred name:
NM_000053.4(ATP7B):c.4135C>T (p.Pro1379Ser)
HGVS:
  • NC_000013.11:g.51935019G>A
  • NG_008806.1:g.81476C>T
  • NM_000053.4:c.4135C>TMANE SELECT
  • NM_001005918.3:c.3514C>T
  • NM_001243182.2:c.3802C>T
  • NM_001330578.2:c.3901C>T
  • NM_001330579.2:c.3883C>T
  • NP_000044.2:p.Pro1379Ser
  • NP_001005918.1:p.Pro1172Ser
  • NP_001230111.1:p.Pro1268Ser
  • NP_001317507.1:p.Pro1301Ser
  • NP_001317508.1:p.Pro1295Ser
  • NC_000013.10:g.52509155G>A
  • NM_000053.2:c.4135C>T
  • NM_000053.3:c.4135C>T
  • NM_001005918.2:c.3514C>T
  • P35670:p.Pro1379Ser
Protein change:
P1172S
Links:
UniProtKB: P35670#VAR_044494; dbSNP: rs181250704
NCBI 1000 Genomes Browser:
rs181250704
Molecular consequence:
  • NM_000053.4:c.4135C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001005918.3:c.3514C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001243182.2:c.3802C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330578.2:c.3901C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330579.2:c.3883C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002522907Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Nov 23, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein, SCV002522907.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

ACMG classification criteria: PM2, PP3

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 22, 2024