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NM_002334.4(LRP4):c.430+15C>T AND multiple conditions

Germline classification:
Benign/Likely benign (2 submissions)
Last evaluated:
Nov 13, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002176426.6

Allele description [Variation Report for NM_002334.4(LRP4):c.430+15C>T]

NM_002334.4(LRP4):c.430+15C>T

Gene:
LRP4:LDL receptor related protein 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p11.2
Genomic location:
Preferred name:
NM_002334.4(LRP4):c.430+15C>T
HGVS:
  • NC_000011.10:g.46899848G>A
  • NG_021394.1:g.23775C>T
  • NM_002334.4:c.430+15C>TMANE SELECT
  • NC_000011.9:g.46921399G>A
Links:
dbSNP: rs199835230
NCBI 1000 Genomes Browser:
rs199835230
Molecular consequence:
  • NM_002334.4:c.430+15C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Cenani-Lenz syndactyly syndrome
Synonyms:
SYNDACTYLY, TYPE VII; Syndactyly Cenani Lenz type; Cenani syndactylism; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008931; MedGen: C1859309; Orphanet: 3258; OMIM: 212780
Name:
Sclerosteosis 2 (SOST2)
Identifiers:
MONDO: MONDO:0013679; MedGen: C3280402; Orphanet: 3152; OMIM: 614305
Name:
Congenital myasthenic syndrome 17
Identifiers:
MONDO: MONDO:0014578; MedGen: C4225377; Orphanet: 590; OMIM: 616304

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002474201Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Benign
(Nov 13, 2023)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002794961Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Sep 1, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Invitae, SCV002474201.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Fulgent Genetics, Fulgent Genetics, SCV002794961.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 5, 2024