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NM_000062.3(SERPING1):c.997G>A (p.Ala333Thr) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 21, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001917099.7

Allele description [Variation Report for NM_000062.3(SERPING1):c.997G>A (p.Ala333Thr)]

NM_000062.3(SERPING1):c.997G>A (p.Ala333Thr)

Gene:
SERPING1:serpin family G member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.1
Genomic location:
Preferred name:
NM_000062.3(SERPING1):c.997G>A (p.Ala333Thr)
HGVS:
  • NC_000011.10:g.57606515G>A
  • NG_009625.1:g.13962G>A
  • NM_000062.3:c.997G>AMANE SELECT
  • NM_001032295.2:c.997G>A
  • NP_000053.2:p.Ala333Thr
  • NP_001027466.1:p.Ala333Thr
  • LRG_105:g.13962G>A
  • NC_000011.9:g.57373988G>A
Protein change:
A333T
Links:
dbSNP: rs202192543
NCBI 1000 Genomes Browser:
rs202192543
Molecular consequence:
  • NM_000062.3:c.997G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001032295.2:c.997G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002153800Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Oct 21, 2024)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutation screening of C1 inhibitor gene in 108 unrelated families with hereditary angioedema: functional and structural correlates.

Pappalardo E, Caccia S, Suffritti C, Tordai A, Zingale LC, Cicardi M.

Mol Immunol. 2008 Aug;45(13):3536-44. doi: 10.1016/j.molimm.2008.05.007. Epub 2008 Jun 30.

PubMed [citation]
PMID:
18586324

A case of hereditary angioedema involving recurrent abdominal attacks.

Kasamatsu Y, Yoshinoya K, Kasamatsu Y, Yamamoto T, Horiuchi T, Kadoya M.

Intern Med. 2011;50(23):2911-4. Epub 2011 Dec 1.

PubMed [citation]
PMID:
22129507
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002153800.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 333 of the SERPING1 protein (p.Ala333Thr). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with SERPING1-related conditions. ClinVar contains an entry for this variant (Variation ID: 1379992). An algorithm developed to predict the effect of missense changes on protein structure and function outputs the following: PolyPhen-2: "Possibly Damaging". The threonine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. This variant disrupts the p.Ala333 amino acid residue in SERPING1. Other variant(s) that disrupt this residue have been observed in individuals with SERPING1-related conditions (PMID: 18586324, 22129507), which suggests that this may be a clinically significant amino acid residue. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 25, 2025