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NM_000335.5(SCN5A):c.1743G>A (p.Ser581=) AND Cardiac arrhythmia

Germline classification:
Benign (2 submissions)
Last evaluated:
Feb 5, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001842446.12

Allele description [Variation Report for NM_000335.5(SCN5A):c.1743G>A (p.Ser581=)]

NM_000335.5(SCN5A):c.1743G>A (p.Ser581=)

Gene:
SCN5A:sodium voltage-gated channel alpha subunit 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.2
Genomic location:
Preferred name:
NM_000335.5(SCN5A):c.1743G>A (p.Ser581=)
HGVS:
  • NC_000003.12:g.38603859C>T
  • NG_008934.1:g.50814G>A
  • NM_000335.5:c.1743G>AMANE SELECT
  • NM_001099404.1:c.1743G>A
  • NM_001099404.2:c.1743G>A
  • NM_001099405.2:c.1743G>A
  • NM_001160160.2:c.1743G>A
  • NM_001160161.2:c.1743G>A
  • NM_001354701.2:c.1743G>A
  • NM_198056.3:c.1743G>A
  • NP_000326.2:p.Ser581=
  • NP_001092874.1:p.Ser581=
  • NP_001092875.1:p.Ser581=
  • NP_001153632.1:p.Ser581=
  • NP_001153633.1:p.Ser581=
  • NP_001341630.1:p.Ser581=
  • NP_932173.1:p.Ser581=
  • NP_932173.1:p.Ser581=
  • LRG_289t1:c.1743G>A
  • LRG_289t3:c.1743G>A
  • LRG_289:g.50814G>A
  • LRG_289p1:p.Ser581=
  • NC_000003.11:g.38645350C>T
  • NM_198056.2:c.1743G>A
  • p.Ser581Ser
Links:
dbSNP: rs41313687
NCBI 1000 Genomes Browser:
rs41313687
Molecular consequence:
  • NM_000335.5:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001099404.2:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001099405.2:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001160160.2:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001160161.2:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354701.2:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_198056.3:c.1743G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
365

Condition(s)

Name:
Cardiac arrhythmia
Synonyms:
Cardiac rhythm disease
Identifiers:
EFO: EFO_0004269; MONDO: MONDO:0007263; MedGen: C0003811; Human Phenotype Ontology: HP:0011675

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000911308Color Diagnostics, LLC DBA Color Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Mar 8, 2018)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

SCV004823196All of Us Research Program, National Institutes of Health
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Feb 5, 2024)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown365not providednot provided108544not providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Color Diagnostics, LLC DBA Color Health, SCV000911308.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From All of Us Research Program, National Institutes of Health, SCV004823196.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided365not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown108544not providednot provided365not providednot providednot provided

Last Updated: Sep 29, 2024