NM_001367721.1(CASK):c.1466G>A (p.Arg489Gln) AND Abnormality of the nervous system

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Jul 10, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001814250.4

Allele description [Variation Report for NM_001367721.1(CASK):c.1466G>A (p.Arg489Gln)]

NM_001367721.1(CASK):c.1466G>A (p.Arg489Gln)

Gene:

CASK:calcium/calmodulin dependent serine protein kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xp11.4

Genomic location:

Preferred name:

NM_001367721.1(CASK):c.1466G>A (p.Arg489Gln)

HGVS:

NC_000023.11:g.41578377C>T
NG_016754.2:g.349658G>A
NM_001126054.3:c.1466G>A
NM_001126055.3:c.1448G>A
NM_001367721.1:c.1466G>AMANE SELECT
NM_001410745.1:c.1448G>A
NM_003688.4:c.1466G>A
NP_001119526.1:p.Arg489Gln
NP_001119526.1:p.Arg489Gln
NP_001119527.1:p.Arg483Gln
NP_001119527.1:p.Arg483Gln
NP_001354650.1:p.Arg489Gln
NP_001397674.1:p.Arg483Gln
NP_003679.2:p.Arg489Gln
NP_003679.2:p.Arg489Gln
NC_000023.10:g.41437630C>T
NC_000023.10:g.41437630C>T
NM_001126054.2:c.1466G>A
NM_001126055.2:c.1448G>A
NM_003688.3:c.1466G>A

Protein change:

R483Q

Links:

dbSNP: rs1602292076

NCBI 1000 Genomes Browser:

rs1602292076

Molecular consequence:

NM_001126054.3:c.1466G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001126055.3:c.1448G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001367721.1:c.1466G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001410745.1:c.1448G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_003688.4:c.1466G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Abnormality of the nervous system
Synonyms:: Congenital nervous system disorder
Identifiers:: MONDO: MONDO:0002320; MedGen: C0497552; Human Phenotype Ontology: HP:0000707

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001755135	Kariminejad - Najmabadi Pathology & Genetics Center	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Jul 10, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001755135

Kariminejad - Najmabadi Pathology & Genetics Center

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Jul 10, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Kariminejad - Najmabadi Pathology & Genetics Center, SCV001755135.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jan 4, 2025

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