NM_001374258.1(BRAF):c.1523T>C (p.Phe508Ser) AND Noonan syndrome and Noonan-related syndrome

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Apr 1, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001813222.3

Allele description [Variation Report for NM_001374258.1(BRAF):c.1523T>C (p.Phe508Ser)]

NM_001374258.1(BRAF):c.1523T>C (p.Phe508Ser)

Gene:

BRAF:B-Raf proto-oncogene, serine/threonine kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q34

Genomic location:

Preferred name:

NM_001374258.1(BRAF):c.1523T>C (p.Phe508Ser)

Other names:

p.F468S:TTT>TCT

HGVS:

NC_000007.14:g.140781605A>G
NG_007873.3:g.148160T>C
NM_001354609.2:c.1403T>C
NM_001374244.1:c.1523T>C
NM_001374258.1:c.1523T>C
NM_001378467.1:c.1412T>C
NM_001378468.1:c.1403T>C
NM_001378469.1:c.1337T>C
NM_001378470.1:c.1301T>C
NM_001378471.1:c.1292T>C
NM_001378472.1:c.1247T>C
NM_001378473.1:c.1247T>C
NM_001378474.1:c.1403T>C
NM_001378475.1:c.1139T>C
NM_004333.6:c.1403T>CMANE SELECT
NP_001341538.1:p.Phe468Ser
NP_001361173.1:p.Phe508Ser
NP_001361187.1:p.Phe508Ser
NP_001365396.1:p.Phe471Ser
NP_001365397.1:p.Phe468Ser
NP_001365398.1:p.Phe446Ser
NP_001365399.1:p.Phe434Ser
NP_001365400.1:p.Phe431Ser
NP_001365401.1:p.Phe416Ser
NP_001365402.1:p.Phe416Ser
NP_001365403.1:p.Phe468Ser
NP_001365404.1:p.Phe380Ser
NP_004324.2:p.Phe468Ser
LRG_299t1:c.1403T>C
LRG_299:g.148160T>C
NC_000007.13:g.140481405A>G
NM_004333.4:c.1403T>C
NM_004333.5:c.1403T>C
P15056:p.Phe468Ser
c.1403T>C

Protein change:

F380S

Links:

UniProtKB: P15056#VAR_035097; dbSNP: rs397507473

NCBI 1000 Genomes Browser:

rs397507473

Molecular consequence:

NM_001354609.2:c.1403T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001374244.1:c.1523T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001374258.1:c.1523T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378467.1:c.1412T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378468.1:c.1403T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378469.1:c.1337T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378470.1:c.1301T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378471.1:c.1292T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378472.1:c.1247T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378473.1:c.1247T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378474.1:c.1403T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001378475.1:c.1139T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_004333.6:c.1403T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Noonan syndrome and Noonan-related syndrome
Identifiers:: MONDO: MONDO:0020297; MedGen: C5681679; Orphanet: 98733

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002060517	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Apr 1, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002060517

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Apr 1, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002060517.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Apr 6, 2024

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