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NM_006892.4(DNMT3B):c.2142G>A (p.Leu714=) AND not provided

Germline classification:
Likely benign (4 submissions)
Last evaluated:
Sep 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001702700.25

Allele description [Variation Report for NM_006892.4(DNMT3B):c.2142G>A (p.Leu714=)]

NM_006892.4(DNMT3B):c.2142G>A (p.Leu714=)

Gene:
DNMT3B:DNA methyltransferase 3 beta [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q11.21
Genomic location:
Preferred name:
NM_006892.4(DNMT3B):c.2142G>A (p.Leu714=)
HGVS:
  • NC_000020.11:g.32801423G>A
  • NG_007290.1:g.44039G>A
  • NM_001207055.2:c.1956G>A
  • NM_001207056.2:c.1854G>A
  • NM_006892.4:c.2142G>AMANE SELECT
  • NM_175848.2:c.2082G>A
  • NM_175849.2:c.2082G>A
  • NM_175850.3:c.2118G>A
  • NP_001193984.1:p.Leu652=
  • NP_001193985.1:p.Leu618=
  • NP_008823.1:p.Leu714=
  • NP_787044.1:p.Leu694=
  • NP_787045.1:p.Leu694=
  • NP_787046.1:p.Leu706=
  • LRG_56t1:c.2142G>A
  • LRG_56:g.44039G>A
  • NC_000020.10:g.31389229G>A
  • NM_006892.3:c.2142G>A
Links:
dbSNP: rs143847495
NCBI 1000 Genomes Browser:
rs143847495
Molecular consequence:
  • NM_001207055.2:c.1956G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001207056.2:c.1854G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_006892.4:c.2142G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_175848.2:c.2082G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_175849.2:c.2082G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_175850.3:c.2118G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001931771Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001967538Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002496667CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Sep 1, 2024)
germlineclinical testing

Citation Link,

SCV005876082ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Likely Benign
(Jan 18, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Details of each submission

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001931771.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001967538.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002496667.22

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

DNMT3B: BP4, BP7

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV005876082.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 25, 2025