NM_001377265.1(MAPT):c.862G>A (p.Gly288Arg) AND not provided

Germline classification:: Likely benign (3 submissions)
Last evaluated:: Nov 21, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001591414.5

Allele description [Variation Report for NM_001377265.1(MAPT):c.862G>A (p.Gly288Arg)]

NM_001377265.1(MAPT):c.862G>A (p.Gly288Arg)

Gene:

MAPT:microtubule associated protein tau [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q21.31

Genomic location:

Preferred name:

NM_001377265.1(MAPT):c.862G>A (p.Gly288Arg)

HGVS:

NC_000017.11:g.45983441G>A
NG_007398.2:g.93979G>A
NM_001123066.4:c.637G>A
NM_001123067.4:c.287-3599G>A
NM_001203251.2:c.287-3599G>A
NM_001203252.2:c.374-3599G>A
NM_001377265.1:c.862G>AMANE SELECT
NM_001377266.1:c.862G>A
NM_001377267.1:c.287-3599G>A
NM_001377268.1:c.200-3599G>A
NM_005910.6:c.374-3599G>A
NM_016834.5:c.200-3599G>A
NM_016835.5:c.637G>A
NM_016841.5:c.200-3599G>A
NP_001116538.2:p.Gly213Arg
NP_001364194.1:p.Gly288Arg
NP_001364195.1:p.Gly288Arg
NP_058519.3:p.Gly213Arg
LRG_660t1:c.637G>A
LRG_660t2:c.862G>A
LRG_660:g.93979G>A
LRG_660p1:p.Gly213Arg
LRG_660p2:p.Gly288Arg
NC_000017.10:g.44060807G>A
NG_007398.1:g.94021G>A
NM_005910.5:c.374-3599G>A

Protein change:

G213R

Links:

dbSNP: rs76375268

NCBI 1000 Genomes Browser:

rs76375268

Molecular consequence:

NM_001123067.4:c.287-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001203251.2:c.287-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001203252.2:c.374-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001377267.1:c.287-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001377268.1:c.200-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_005910.6:c.374-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_016834.5:c.200-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_016841.5:c.200-3599G>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001123066.4:c.637G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001377265.1:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001377266.1:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_016835.5:c.637G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001822873	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Nov 21, 2020)	germline	clinical testing	Citation Link,
SCV001921967	Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing
SCV001932899	Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001822873

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Likely benign
(Nov 21, 2020)

germline

clinical testing

Citation Link,

SCV001921967

Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Likely benign

germline

clinical testing

SCV001932899

Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided

Likely benign

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001822873.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001921967.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001932899.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 20, 2024

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