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NM_000070.3(CAPN3):c.2380+12del AND not provided

Germline classification:
Benign (2 submissions)
Last evaluated:
Jun 1, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001573722.3

Allele description [Variation Report for NM_000070.3(CAPN3):c.2380+12del]

NM_000070.3(CAPN3):c.2380+12del

Gene:
CAPN3:calpain 3 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
15q15.1
Genomic location:
Preferred name:
NM_000070.3(CAPN3):c.2380+12del
HGVS:
  • NC_000015.10:g.42411012del
  • NG_008660.1:g.67910del
  • NM_000070.3:c.2380+12delMANE SELECT
  • NM_024344.2:c.2362+12del
  • NM_173087.2:c.2104+12del
  • NM_173088.2:c.844+12del
  • NM_173089.2:c.385+12del
  • NM_173090.2:c.385+12del
  • LRG_849t1:c.2380+12del
  • LRG_849:g.67910del
  • NC_000015.9:g.42703210del
  • NM_000070.2:c.2380+12del
  • NM_000070.2:c.2380+12delA
Links:
dbSNP: rs28364538
NCBI 1000 Genomes Browser:
rs28364538
Molecular consequence:
  • NM_000070.3:c.2380+12del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_024344.2:c.2362+12del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_173087.2:c.2104+12del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_173088.2:c.844+12del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_173089.2:c.385+12del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_173090.2:c.385+12del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000729896GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Jun 1, 2018)
germlineclinical testing

Citation Link,

SCV001800008Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000729896.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001800008.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 13, 2025