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NM_000404.4(GLB1):c.1306C>T (p.Leu436Phe) AND not provided

Germline classification:
Benign (3 submissions)
Last evaluated:
Sep 13, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001573681.16

Allele description [Variation Report for NM_000404.4(GLB1):c.1306C>T (p.Leu436Phe)]

NM_000404.4(GLB1):c.1306C>T (p.Leu436Phe)

Gene:
GLB1:galactosidase beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.3
Genomic location:
Preferred name:
NM_000404.4(GLB1):c.1306C>T (p.Leu436Phe)
HGVS:
  • NC_000003.12:g.33018489G>A
  • NG_009005.1:g.83714C>T
  • NM_000404.3:c.1306C>T
  • NM_000404.4:c.1306C>TMANE SELECT
  • NM_001079811.3:c.1216C>T
  • NM_001135602.3:c.913C>T
  • NM_001317040.2:c.1450C>T
  • NM_001393580.1:c.1306C>T
  • NP_000395.2:p.Leu436Phe
  • NP_000395.3:p.Leu436Phe
  • NP_001073279.2:p.Leu406Phe
  • NP_001129074.2:p.Leu305Phe
  • NP_001303969.2:p.Leu484Phe
  • NP_001380509.1:p.Leu436Phe
  • NC_000003.11:g.33059981G>A
  • NM_000404.2:c.1306C>T
  • NM_001135602.1:c.913C>T
Protein change:
L305F
Links:
dbSNP: rs34421970
NCBI 1000 Genomes Browser:
rs34421970
Molecular consequence:
  • NM_000404.4:c.1306C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001079811.3:c.1216C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135602.3:c.913C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317040.2:c.1450C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001393580.1:c.1306C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000603839ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Sep 13, 2023)
germlineclinical testing

Citation Link,

SCV000730469GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Mar 29, 2019)
germlineclinical testing

Citation Link,

SCV001799918Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000603839.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV000730469.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 16941474, 12644936)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001799918.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 8, 2024