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NM_019109.5(ALG1):c.391-24C>T AND ALG1-congenital disorder of glycosylation

Germline classification:
Benign (1 submission)
Last evaluated:
Jul 14, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001549004.2

Allele description [Variation Report for NM_019109.5(ALG1):c.391-24C>T]

NM_019109.5(ALG1):c.391-24C>T

Gene:
ALG1:ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_019109.5(ALG1):c.391-24C>T
HGVS:
  • NC_000016.10:g.5075364C>T
  • NG_009202.1:g.8556C>T
  • NM_001330504.2:c.58-24C>T
  • NM_019109.5:c.391-24C>TMANE SELECT
  • NC_000016.9:g.5125365C>T
  • NM_019109.4:c.391-24C>T
Links:
dbSNP: rs4786590
NCBI 1000 Genomes Browser:
rs4786590
Molecular consequence:
  • NM_001330504.2:c.58-24C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_019109.5:c.391-24C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
ALG1-congenital disorder of glycosylation
Synonyms:
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Ik; CDG Ik; Congenital disorder of glycosylation type 1K; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0012052; MedGen: C2931005; Orphanet: 79327; OMIM: 608540

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001769043Genome-Nilou Lab
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benign
(Jul 14, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenonot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Genome-Nilou Lab, SCV001769043.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenonot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024