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NM_000540.3(RYR1):c.5183C>T (p.Ser1728Phe) AND Malignant hyperthermia of anesthesia

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 11, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001449805.4

Allele description [Variation Report for NM_000540.3(RYR1):c.5183C>T (p.Ser1728Phe)]

NM_000540.3(RYR1):c.5183C>T (p.Ser1728Phe)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.5183C>T (p.Ser1728Phe)
Other names:
NM_000540.2(RYR1):c.5183C>T
HGVS:
  • NC_000019.10:g.38485838C>T
  • NG_008866.1:g.57139C>T
  • NM_000540.3:c.5183C>TMANE SELECT
  • NM_001042723.2:c.5183C>T
  • NP_000531.2:p.Ser1728Phe
  • NP_000531.2:p.Ser1728Phe
  • NP_001036188.1:p.Ser1728Phe
  • LRG_766t1:c.5183C>T
  • LRG_766:g.57139C>T
  • LRG_766p1:p.Ser1728Phe
  • NC_000019.9:g.38976478C>T
  • NM_000540.2:c.5183C>T
  • NM_000540.3:c.5183C>T
Protein change:
S1728F
Links:
dbSNP: rs193922781
NCBI 1000 Genomes Browser:
rs193922781
Molecular consequence:
  • NM_000540.3:c.5183C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.5183C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Name:
Malignant hyperthermia of anesthesia
Synonyms:
Anesthesic-triggered malignant hyperthermia
Identifiers:
MONDO: MONDO:0018493; MedGen: C0024591; Human Phenotype Ontology: HP:0034733

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001653097Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Likely pathogenic
(Feb 11, 2020)
germlineclinical testing

PubMed (8)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown22not providednot providednot providedclinical testing

Citations

PubMed

Mutations in RYR1 in malignant hyperthermia and central core disease.

Robinson R, Carpenter D, Shaw MA, Halsall J, Hopkins P.

Hum Mutat. 2006 Oct;27(10):977-89. Review.

PubMed [citation]
PMID:
16917943

Genetic variation in RYR1 and malignant hyperthermia phenotypes.

Carpenter D, Robinson RL, Quinnell RJ, Ringrose C, Hogg M, Casson F, Booms P, Iles DE, Halsall PJ, Steele DS, Shaw MA, Hopkins PM.

Br J Anaesth. 2009 Oct;103(4):538-48. doi: 10.1093/bja/aep204. Epub 2009 Jul 31.

PubMed [citation]
PMID:
19648156
See all PubMed Citations (8)

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV001653097.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testing PubMed (8)

Description

The p.Ser1728Phe variant in RYR1 has been reported in at least 8 individuals with malignant hyperthermia susceptibility (MH) and segregated with disease in 6 affected family members (Robinson 2006 PMID:16917943, Dalton 2007 (thesis), Carpenter 2009 PMID 19648156, Miller 2018 PMID 30236257). In one family, it was reported not to segregate clearly with disease (with phenotyping based on in vitro contracture tests; IVCT) but no specific details were provided (Miller 2018 PMID 30236257). In addition, it has been reported at least 1 individual with no personal or family history of MH (Gonsalves 2013 PMID 24195946), was identified in 1/34500 Latino chromosomes by gnomAD (http://gnomad.broadinstitute.org/) and has also been reported in ClinVar (Variation ID 133144). Notably, IVCT performed on muscle tissue from individuals carrying this variant suggest that the p.Ser1728Phe variant may be associated with weaker MH phenotypes (Carpenter 2009 PMID 19648156). Computational prediction tools and conservation analysis suggest that the variant may not impact the protein. In summary, although additional studies are required to fully establish its clinical significance, this variant meets criteria to be classified as likely pathogenic for autosomal dominant MH with a less severe phenotype than other disease causing RYR1 variants. ACMG/AMP Criteria applied: PM2, PS4_Moderate, PP1_Moderate, PS3_Moderate, BP4.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided2not provided2not provided

Last Updated: Jan 13, 2025