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NM_002691.4(POLD1):c.463+8_463+9delinsTT AND Carcinoma of colon

Germline classification:
Likely benign (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001358566.1

Allele description [Variation Report for NM_002691.4(POLD1):c.463+8_463+9delinsTT]

NM_002691.4(POLD1):c.463+8_463+9delinsTT

Gene:
POLD1:DNA polymerase delta 1, catalytic subunit [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_002691.4(POLD1):c.463+8_463+9delinsTT
HGVS:
  • NC_000019.10:g.50401932_50401933delinsTT
  • NG_033800.1:g.22610_22611delinsTT
  • NM_001256849.1:c.463+8_463+9delinsTT
  • NM_001308632.1:c.463+8_463+9delinsTT
  • NM_002691.4:c.463+8_463+9delinsTTMANE SELECT
  • LRG_785t1:c.463+8_463+9delinsTT
  • LRG_785t2:c.463+8_463+9delinsTT
  • LRG_785:g.22610_22611delinsTT
  • NC_000019.9:g.50905189_50905190delinsTT
  • NM_002691.2:c.463+8_463+9delinsTT
  • NM_002691.3:c.463+8_463+9delinsTT
Links:
dbSNP: rs796285537
NCBI 1000 Genomes Browser:
rs796285537
Molecular consequence:
  • NM_001256849.1:c.463+8_463+9delinsTT - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001308632.1:c.463+8_463+9delinsTT - intron variant - [Sequence Ontology: SO:0001627]
  • NM_002691.4:c.463+8_463+9delinsTT - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Carcinoma of colon (CRC)
Synonyms:
Colonic carcinoma; Colon carcinoma
Identifiers:
MONDO: MONDO:0002032; MedGen: C0699790

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001554342Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR)

See additional submitters

no assertion criteria provided
Likely benignunknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR), SCV001554342.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The POLD1 c.463+8_463+9delinsTT variant was not identified in the literature nor was it identified in MutDB. The variant was identified in dbSNP (ID: rs796285537 as With other allele) and ClinVar (3x as likely benign and 1x as benign). The variant was not identified in the following control databases: the 1000 Genomes Project, the NHLBI GO Exome Sequencing Project, the Exome Aggregation Consortium (August 8th 2016), or the Genome Aggregation Database (Feb 27, 2017). However, each nucleotide substitution included in this variant was identified in control databases: c.463+8G>T at a frequency of 0.1, c.463+9C>T at a frequency of 0.007, and both occurring at the highest frequency in the African population (Genome Aggregation Database Feb 27, 2017). In addition, the two variants are sometimes identified in both ExAC and Gnomad as occurring in cis (c.463+8_463+9delinsTT variant), which can be seen in the IGV tracks provided; however, frequency information is not available at this time. In summary, the clinical significance of this variant cannot be determined with certainty at this time, although available information suggests a benign role. This variant is classified as likely benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024