NM_033629.6(TREX1):c.317A>G (p.Asn106Ser) AND Aicardi-Goutieres syndrome 1

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 20, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001330235.1

Allele description [Variation Report for NM_033629.6(TREX1):c.317A>G (p.Asn106Ser)]

NM_033629.6(TREX1):c.317A>G (p.Asn106Ser)

Genes:

ATRIP:ATR interacting protein [Gene - OMIM - HGNC]
ATRIP-TREX1:ATRIP-TREX1 readthrough [Gene]
TREX1:three prime repair exonuclease 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.31

Genomic location:

Preferred name:

NM_033629.6(TREX1):c.317A>G (p.Asn106Ser)

HGVS:

NC_000003.12:g.48466972A>G
NG_009820.2:g.6143A>G
NG_033100.1:g.38889T>C
NG_033100.2:g.42838T>C
NG_041782.1:g.25263A>G
NG_099339.1:g.915A>G
NG_099340.1:g.33A>G
NM_001271022.2:c.*1418A>G
NM_001271023.2:c.*1418A>G
NM_007248.5:c.287A>G
NM_032166.4:c.*1418A>G
NM_033629.6:c.317A>GMANE SELECT
NM_130384.3:c.*1418A>GMANE SELECT
NP_009179.2:p.Asn96Ser
NP_338599.1:p.Asn106Ser
NP_338599.1:p.Asn106Ser
LRG_282t1:c.317A>G
LRG_282:g.6143A>G
LRG_282p1:p.Asn106Ser
NC_000003.11:g.48508371A>G
NM_033629.3:c.317A>G
NM_033629.4:c.317A>G
NR_153405.1:n.3626A>G

Protein change:

N106S

Links:

dbSNP: rs2040342178

Molecular consequence:

NM_001271022.2:c.*1418A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_001271023.2:c.*1418A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_032166.4:c.*1418A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_130384.3:c.*1418A>G - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_007248.5:c.287A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_033629.6:c.317A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_153405.1:n.3626A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Aicardi-Goutieres syndrome 1
Synonyms:: CREE ENCEPHALITIS; ENCEPHALOPATHY, FAMILIAL INFANTILE, WITH INTRACRANIAL CALCIFICATION AND CHRONIC CEREBROSPINAL FLUID LYMPHOCYTOSIS; PSEUDOTOXOPLASMOSIS SYNDROME
Identifiers:: MONDO: MONDO:0009165; MedGen: C0796126; Orphanet: 51; OMIM: 225750

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001521858	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Sep 20, 2020)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001521858

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Sep 20, 2020)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee.

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV001521858.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

ClinVar

Relating variation to medicine