NM_173653.4(SLC9A9):c.587del (p.Asn196fs) AND Colorectal cancer

Germline classification:: Pathogenic (1 submission)
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001293845.1

Allele description [Variation Report for NM_173653.4(SLC9A9):c.587del (p.Asn196fs)]

NM_173653.4(SLC9A9):c.587del (p.Asn196fs)

Gene:

SLC9A9:solute carrier family 9 member A9 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

3q24

Genomic location:

Preferred name:

NM_173653.4(SLC9A9):c.587del (p.Asn196fs)

HGVS:

NC_000003.12:g.143693258del
NG_017077.2:g.160278del
NM_173653.4:c.587delMANE SELECT
NP_775924.1:p.Asn196fs
NC_000003.11:g.143412100del
NG_017077.1:g.160278del
NM_173653.4:c.587delAMANE SELECT

Protein change:

N196fs

Links:

dbSNP: rs1933531491

NCBI 1000 Genomes Browser:

rs1933531491

Molecular consequence:

NM_173653.4:c.587del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Colorectal cancer
Synonyms:: Colorectal cancer, somatic; Malignant Colorectal Neoplasm
Identifiers:: MONDO: MONDO:0005575; MedGen: C0346629; OMIM: 114500

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001481776	Genomic Center, National Cancer Institute	no assertion criteria provided	Pathogenic	germline	case-control

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001481776

Genomic Center, National Cancer Institute

no assertion criteria provided

Pathogenic

germline

case-control

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	case-control

Details of each submission

From Genomic Center, National Cancer Institute, SCV001481776.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	case-control	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	whole blood and tissue	not provided		not provided	not provided	not provided	not provided

Last Updated: Jul 16, 2023

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