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NM_000492.4(CFTR):c.3274T>C (p.Tyr1092His) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 24, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001293419.12

Allele description [Variation Report for NM_000492.4(CFTR):c.3274T>C (p.Tyr1092His)]

NM_000492.4(CFTR):c.3274T>C (p.Tyr1092His)

Genes:
CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]
LOC111674472:DNase I hypersensitive sites in introns 16 and 17a of CFTR [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
7q31.2
Genomic location:
Preferred name:
NM_000492.4(CFTR):c.3274T>C (p.Tyr1092His)
HGVS:
  • NC_000007.14:g.117611715T>C
  • NG_016465.4:g.150932T>C
  • NG_056128.2:g.4769T>C
  • NM_000492.4:c.3274T>CMANE SELECT
  • NP_000483.3:p.Tyr1092His
  • NP_000483.3:p.Tyr1092His
  • LRG_663t1:c.3274T>C
  • LRG_663:g.150932T>C
  • LRG_663p1:p.Tyr1092His
  • NC_000007.13:g.117251769T>C
  • NM_000492.3:c.3274T>C
  • p.Tyr1092His
Protein change:
Y1092H
Links:
dbSNP: rs376968326
NCBI 1000 Genomes Browser:
rs376968326
Molecular consequence:
  • NM_000492.4:c.3274T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000696961Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Jun 24, 2024)
germlineclinical testing

PubMed (9)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A combined analysis of the cystic fibrosis transmembrane conductance regulator: implications for structure and disease models.

Chen JM, Cutler C, Jacques C, Boeuf G, Denamur E, Lecointre G, Mercier B, Cramb G, Férec C.

Mol Biol Evol. 2001 Sep;18(9):1771-88.

PubMed [citation]
PMID:
11504857

Next generation diagnostics of cystic fibrosis and CFTR-related disorders by targeted multiplex high-coverage resequencing of CFTR.

Trujillano D, Ramos MD, González J, Tornador C, Sotillo F, Escaramis G, Ossowski S, Armengol L, Casals T, Estivill X.

J Med Genet. 2013 Jul;50(7):455-62. doi: 10.1136/jmedgenet-2013-101602. Epub 2013 May 17.

PubMed [citation]
PMID:
23687349
See all PubMed Citations (9)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV000696961.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (9)

Description

Variant summary: CFTR c.3274T>C (p.Tyr1092His) results in a conservative amino acid change located in the ABC transporter type 1, transmembrane domain (IPR011527) of the encoded protein sequence. Four of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 2.4e-05 in 251172 control chromosomes.c.3274T>C has been reported in the literature in individuals affected with Cystic Fibrosis in compound heterozygosity with known- or likely pathogenic variants (Trujillano_2013, Prontera_2016). These data indicate that the variant may be associated with disease. At least one publication reports experimental evidence evaluating an impact on protein function. The most pronounced variant effect resulted in approximately (18.5)% of normal chloride channel conductance relative to wild type (e.g., Bihler_2024). The following publications have been ascertained in the context of this evaluation (PMID: 26990548, 34140271, 35273129, 11504857, 27728908, 25735457, 25087612, 23687349, 38388235). ClinVar contains an entry for this variant (Variation ID: 495930). Based on the evidence outlined above, the variant was classified as VUS-possibly pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024