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NM_001079866.2(BCS1L):c.775T>A (p.Ser259Thr) AND GRACILE syndrome

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 25, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001276430.1

Allele description [Variation Report for NM_001079866.2(BCS1L):c.775T>A (p.Ser259Thr)]

NM_001079866.2(BCS1L):c.775T>A (p.Ser259Thr)

Gene:
BCS1L:BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_001079866.2(BCS1L):c.775T>A (p.Ser259Thr)
HGVS:
  • NC_000002.12:g.218662565T>A
  • NG_008018.1:g.7910T>A
  • NG_033099.1:g.1976A>T
  • NM_001079866.2:c.775T>AMANE SELECT
  • NM_001257342.2:c.775T>A
  • NM_001257343.2:c.775T>A
  • NM_001257344.2:c.775T>A
  • NM_001318836.2:c.415T>A
  • NM_001320717.2:c.775T>A
  • NM_001371443.1:c.775T>A
  • NM_001371444.1:c.775T>A
  • NM_001371446.1:c.775T>A
  • NM_001371447.1:c.775T>A
  • NM_001371448.1:c.775T>A
  • NM_001371449.1:c.775T>A
  • NM_001371450.1:c.775T>A
  • NM_001371451.1:c.415T>A
  • NM_001371452.1:c.274T>A
  • NM_001371453.1:c.274T>A
  • NM_001371454.1:c.274T>A
  • NM_001371455.1:c.274T>A
  • NM_001371456.1:c.274T>A
  • NM_001374085.1:c.775T>A
  • NM_001374086.1:c.274T>A
  • NM_004328.5:c.775T>A
  • NP_001073335.1:p.Ser259Thr
  • NP_001244271.1:p.Ser259Thr
  • NP_001244272.1:p.Ser259Thr
  • NP_001244273.1:p.Ser259Thr
  • NP_001305765.1:p.Ser139Thr
  • NP_001307646.1:p.Ser259Thr
  • NP_001358372.1:p.Ser259Thr
  • NP_001358373.1:p.Ser259Thr
  • NP_001358375.1:p.Ser259Thr
  • NP_001358376.1:p.Ser259Thr
  • NP_001358377.1:p.Ser259Thr
  • NP_001358378.1:p.Ser259Thr
  • NP_001358379.1:p.Ser259Thr
  • NP_001358380.1:p.Ser139Thr
  • NP_001358381.1:p.Ser92Thr
  • NP_001358382.1:p.Ser92Thr
  • NP_001358383.1:p.Ser92Thr
  • NP_001358384.1:p.Ser92Thr
  • NP_001358385.1:p.Ser92Thr
  • NP_001361014.1:p.Ser259Thr
  • NP_001361015.1:p.Ser92Thr
  • NP_004319.1:p.Ser259Thr
  • LRG_539t1:c.775T>A
  • LRG_539:g.7910T>A
  • NC_000002.11:g.219527288T>A
  • NM_004328.4:c.775T>A
  • NR_163955.1:n.1782T>A
  • p.Ser259Thr
Protein change:
S139T
Links:
dbSNP: rs77729067
NCBI 1000 Genomes Browser:
rs77729067
Molecular consequence:
  • NM_001079866.2:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001257342.2:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001257343.2:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001257344.2:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001318836.2:c.415T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001320717.2:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371443.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371444.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371446.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371447.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371448.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371449.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371450.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371451.1:c.415T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371452.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371453.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371454.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371455.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371456.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374085.1:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374086.1:c.274T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004328.5:c.775T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_163955.1:n.1782T>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
GRACILE syndrome (FLNMS)
Synonyms:
FELLMAN SYNDROME; FINNISH LETHAL NEONATAL METABOLIC SYNDROME
Identifiers:
MONDO: MONDO:0011308; MedGen: C1864002; Orphanet: 53693; OMIM: 603358

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001462705Natera, Inc.
no assertion criteria provided
Likely benign
(Apr 25, 2020)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Natera, Inc., SCV001462705.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 16, 2025