NM_001384140.1(PCDH15):c.3951C>T (p.Thr1317=) AND Usher syndrome type 1F

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jan 7, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001272410.1

Allele description [Variation Report for NM_001384140.1(PCDH15):c.3951C>T (p.Thr1317=)]

NM_001384140.1(PCDH15):c.3951C>T (p.Thr1317=)

Gene:
PCDH15:protocadherin related 15 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q21.1
Genomic location:
Preferred name:
NM_001384140.1(PCDH15):c.3951C>T (p.Thr1317=)
HGVS:
  • NC_000010.11:g.53840352G>A
  • NG_009191.3:g.1793831C>T
  • NM_001142763.2:c.3966C>T
  • NM_001142764.2:c.3951C>T
  • NM_001142765.2:c.3738C>T
  • NM_001142766.2:c.3951C>T
  • NM_001142767.2:c.3840C>T
  • NM_001142768.2:c.3885C>T
  • NM_001142769.3:c.3987C>T
  • NM_001142770.3:c.3951C>T
  • NM_001142771.2:c.3966C>T
  • NM_001142772.2:c.3951C>T
  • NM_001142773.2:c.3885C>T
  • NM_001354404.2:c.3885C>T
  • NM_001354411.2:c.3972C>T
  • NM_001354420.2:c.3951C>T
  • NM_001354429.2:c.3951C>T
  • NM_001384140.1:c.3951C>TMANE SELECT
  • NM_033056.4:c.3951C>T
  • NP_001136235.1:p.Thr1322=
  • NP_001136236.1:p.Thr1317=
  • NP_001136237.1:p.Thr1246=
  • NP_001136238.1:p.Thr1317=
  • NP_001136239.1:p.Thr1280=
  • NP_001136240.1:p.Thr1295=
  • NP_001136241.1:p.Thr1329=
  • NP_001136242.1:p.Thr1317=
  • NP_001136243.1:p.Thr1322=
  • NP_001136244.1:p.Thr1317=
  • NP_001136245.1:p.Thr1295=
  • NP_001341333.1:p.Thr1295=
  • NP_001341340.1:p.Thr1324=
  • NP_001341349.1:p.Thr1317=
  • NP_001341358.1:p.Thr1317=
  • NP_001371069.1:p.Thr1317=
  • NP_149045.3:p.Thr1317=
  • NC_000010.10:g.55600112G>A
  • NM_033056.3:c.3951C>T
  • p.Thr1317Thr
Links:
dbSNP: rs144955298
NCBI 1000 Genomes Browser:
rs144955298
Molecular consequence:
  • NM_001142763.2:c.3966C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142764.2:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142765.2:c.3738C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142766.2:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142767.2:c.3840C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142768.2:c.3885C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142769.3:c.3987C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142770.3:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142771.2:c.3966C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142772.2:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001142773.2:c.3885C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354404.2:c.3885C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354411.2:c.3972C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354420.2:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001354429.2:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001384140.1:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_033056.4:c.3951C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Usher syndrome type 1F (USH1F)
Synonyms:
USHER SYNDROME, TYPE IF
Identifiers:
MONDO: MONDO:0011186; MedGen: C1865885; Orphanet: 231169; Orphanet: 886; OMIM: 602083

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001454395Natera, Inc.
no assertion criteria provided
Likely benign
(Jan 7, 2020) 		germlineclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Natera, Inc., SCV001454395.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024